PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00035013-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 521aa MW: 59356 Da PI: 9.9839 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.9 | 1.3e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd +l+ ++ +G g W++ ++ g++R++k+c++rw +yl PSME_00035013-RA 14 KGTWTSEEDARLIAHIRAHGEGAWRSLPKAAGLRRCGKSCRLRWINYL 61 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 58.7 | 1.3e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++++eEde++v+++ +lG++ W++Ia ++ gRt++++k++w+++ PSME_00035013-RA 67 RGNFSEEEDEQIVKLHSLLGNK-WSLIAGLLP-GRTDNEIKNHWNTH 111 89********************.*********.************97 PP | |||||||
3 | Myb_DNA-binding | 22.1 | 3.5e-07 | 243 | 268 | 1 | 27 |
TSSS-HHHHHHHHHHHHHTTTT-HHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktI 27 rg++++eEde++v+++ +lG++ W+ I PSME_00035013-RA 243 RGNFSEEEDEQIVKLHYRLGNK-WSFI 268 89********************.*987 PP | |||||||
4 | Myb_DNA-binding | 42.5 | 1.5e-13 | 414 | 460 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + +WT+ Ed +lv ++ +G g W++ ++ g++R++k+c++rw +y PSME_00035013-RA 414 KVAWTPKEDSRLVAHIRSHGEGAWRSLPKAAGLRRCGKSCRLRWINY 460 568******************************************99 PP | |||||||
5 | Myb_DNA-binding | 49 | 1.5e-15 | 467 | 511 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++++eEde++v+++ +lG++ W+ Ia ++ gRt+ ++k++ +++ PSME_00035013-RA 467 RGNFSEEEDEQIVKLHSRLGNK-WSFIAGLLP-GRTDSEIKNHCNTH 511 89********************.*********.**********9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.7E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.985 | 9 | 61 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.94E-28 | 13 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.9E-12 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.20E-7 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.735 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-27 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.02E-11 | 69 | 112 | No hit | No description |
SuperFamily | SSF46689 | 6.27E-11 | 223 | 268 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.3E-9 | 223 | 249 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.987 | 238 | 293 | IPR017930 | Myb domain |
SMART | SM00717 | 3.3 | 242 | 291 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-6 | 250 | 268 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.2E-20 | 405 | 464 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.489 | 409 | 461 | IPR017930 | Myb domain |
SMART | SM00717 | 9.5E-10 | 413 | 463 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.26E-25 | 413 | 507 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.7E-11 | 414 | 460 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.83E-7 | 416 | 460 | No hit | No description |
PROSITE profile | PS51294 | 23.187 | 462 | 516 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-22 | 465 | 515 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-14 | 466 | 514 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-13 | 467 | 511 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.39E-9 | 469 | 512 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 521 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGTWTSE EDARLIAHIR AHGEGAWRSL PKAAGLRRCG KSCRLRWINY 60 LRPDLKRGNF SEEEDEQIVK LHSLLGNKWS LIAGLLPGRT DNEIKNHWNT HIKKKMVSRG 120 FEPQSHIPLS QPHNSNTTCT SLPVPEHEIP AFQSPRTPEP ADIFAYDRSE SSPMQLVASK 180 AEEHPELNLD LRLSLPSHSI PAANRASRIH RAMDSNLNSE RLRRCGKSCR LRWINYPRPH 240 RKRGNFSEEE DEQIVKLHYR LGNKWSFIGV ARTDGQRDKE PLQHPLQEKK WRAGNLNPRG 300 QSHRPLGQPY DSKAAYSSLP GECPPPRMKF QHFFQYGRSE SSSMQLVASK AEEHPELNLD 360 LCMSLTSHSN PAANRASRDH RTVDSNSNYE NGVCCLTGMH MGRTPCCEKA HTNKVAWTPK 420 EDSRLVAHIR SHGEGAWRSL PKAAGLRRCG KSCRLRWINY PRPDLKRGNF SEEEDEQIVK 480 LHSRLGNKWS FIAGLLPGRT DSEIKNHCNT HFKKKNGEQG T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-27 | 13 | 515 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010028718.1 | 1e-83 | PREDICTED: myb-related protein 308 | ||||
Swissprot | Q9SZP1 | 2e-79 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | Q27IP2 | 1e-120 | Q27IP2_PINTA; R2R3-MYB transcription factor MYB14 | ||||
STRING | XP_010028718.1 | 5e-83 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 7e-82 | myb domain protein 4 |