PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00034793-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 151aa MW: 17237.1 Da PI: 9.7718 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 120.4 | 1.7e-37 | 36 | 141 | 2 | 107 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 ppGfrF Ptdeelvv+yL+kk + + +++ +i+evd+yk++Pw+Lp k+ +ekewyfF++rd+ky++g+r++ra++sgyWkatg d+++ + PSME_00034793-RA 36 PPGFRFFPTDEELVVHYLCKKEALQIIPV-PIIAEVDLYKYDPWQLPDKALFGEKEWYFFTPRDRKYPNGSRPKRAASSGYWKATGADNPINA 127 9*************************999.88***************8777899*************************************** PP NAM 95 k.kgelvglkktLv 107 k +++ vg+kk Lv PSME_00034793-RA 128 KgGKKRVGIKKALV 141 966777******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-41 | 31 | 141 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 39.149 | 35 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.5E-17 | 36 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MGGLKGLGTI RVAIHLEELC KQARDHCSLL VHNQWPPGFR FFPTDEELVV HYLCKKEALQ 60 IIPVPIIAEV DLYKYDPWQL PDKALFGEKE WYFFTPRDRK YPNGSRPKRA ASSGYWKATG 120 ADNPINAKGG KKRVGIKKAL VSMNIEGIFF F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-53 | 36 | 141 | 16 | 119 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026426066.1 | 3e-59 | NAC domain-containing protein 68-like | ||||
Swissprot | Q52QH4 | 1e-56 | NAC68_ORYSJ; NAC domain-containing protein 68 | ||||
TrEMBL | A0A0D6R3P9 | 4e-61 | A0A0D6R3P9_ARACU; Uncharacterized protein | ||||
STRING | XP_010257746.1 | 5e-57 | (Nelumbo nucifera) | ||||
STRING | GSMUA_Achr4P02390_001 | 2e-57 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 3e-55 | NAC family protein |