PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00034773-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

MYB_related

Protein Properties

Length: 913aa MW: 102222 Da PI: 6.3319

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00034773-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.3	1.5e-07	15	52	1	37
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-H CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtl 37 + +W t+E++ l avk++G ++W++++ +++ ++++ PSME_00034773-RA 15 KSKWGTWEELVLGSAVKKHGADNWDKVSLELQaRKLSP 52 679***************************99755555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.0E-4	9	66	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.423	10	68	IPR017877	Myb-like domain
SMART	SM00717	6.8E-4	14	70	IPR001005	SANT/Myb domain
Pfam	PF00249	7.2E-6	15	49	IPR001005	SANT/Myb domain
CDD	cd00167	1.21E-4	17	67	No hit	No description
SuperFamily	SSF47370	3.14E-17	439	561	IPR001487	Bromodomain
Gene3D	G3DSA:1.20.920.10	4.3E-14	446	579	IPR001487	Bromodomain
SMART	SM00297	5.0E-14	448	559	IPR001487	Bromodomain
CDD	cd04369	4.96E-16	458	554	No hit	No description
Pfam	PF00439	4.9E-10	465	539	IPR001487	Bromodomain
PROSITE profile	PS50014	10.953	470	540	IPR001487	Bromodomain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 913 aa Download sequence Send to blast
METENNNNNN NNNTKSKWGT WEELVLGSAV KKHGADNWDK VSLELQARKL SPYVFSSEDC 60 KAKYHALQGR FKNSHGNSCS NSLPWLDELR KLRVAQLKRE LERYDGSIVS LESKLKKLKT 120 EREQSLLKEQ QKTTEKHTSE QEKERSPEEE GKDGFQMCPE TDPTAPKMED GKIESLDNPN 180 RPLENPDPGS GNPKEDLGSK EALVVHDEIR DENPHGEQDL PLESVQPPSA EEPVPQQPDG 240 KTLDKEPAKP ETLSGPASPL DSYYGSSETI AKEHPNRMGS EQEDGMGSEQ EDEEEEDDDN 300 DNNDNDRMGS EPDDDDDEND AREQVCAEST DVHSETVVDM KDSGFQECSA ESREIGEEEG 360 KGICEKRCDR DARLQPWDSN DVLSSAELST RRKDGRKSSS TSHDASETVR GHYKDYEDSV 420 GAWQHQATRS SGDSQVEGTD EMSPMSKRSR REAKVPGKLL PLLECLRAIS AHKFGSIFKH 480 RLESQDNLYY QSMIRRHVDL AMVRSRLEEG SYSGSVEFFR DLLLVFNNAL VYYPKYSPES 540 GAAYVLRELA TKEMTTIFQT EALLKQEGPS TRKREPRKLP EFSLSAKPNP TPMVSFRKRN 600 ASTSHGEYQV SGPKGAHSTL EQSSPCVIQV QQPQQAEKRK EDETKDDKVK GNKIGEHKVV 660 ESSASPSMTQ ILEKQREQKT DAAKLRTAAN SSAGNASGQS KLDKFAVESK ERIRDTQYHG 720 EPIMTSVNNN HQTKKTTINN KIELKKGPSS KHDLEKNSSD LLAPMKSSSG FFRAKKSSAS 780 TAEPIKSSSH IIETNKSSGN IAKPIKSSNT VEQERISSNA IRRGRELKNK EQQDNLSLKP 840 PLKQPLASTT TTTSTTHEQP LIKRGVGRPP KHAKQASQQH KSQQPLGQKQ QVPELKATES 900 ELLLPRPRKR SRT

Sequence ? help Back to Top

Protein Sequence Length: 913 aa Download sequence Send to blast

METENNNNNN NNNTKSKWGT WEELVLGSAV KKHGADNWDK VSLELQARKL SPYVFSSEDC  60
KAKYHALQGR FKNSHGNSCS NSLPWLDELR KLRVAQLKRE LERYDGSIVS LESKLKKLKT  120
EREQSLLKEQ QKTTEKHTSE QEKERSPEEE GKDGFQMCPE TDPTAPKMED GKIESLDNPN  180
RPLENPDPGS GNPKEDLGSK EALVVHDEIR DENPHGEQDL PLESVQPPSA EEPVPQQPDG  240
KTLDKEPAKP ETLSGPASPL DSYYGSSETI AKEHPNRMGS EQEDGMGSEQ EDEEEEDDDN  300
DNNDNDRMGS EPDDDDDEND AREQVCAEST DVHSETVVDM KDSGFQECSA ESREIGEEEG  360
KGICEKRCDR DARLQPWDSN DVLSSAELST RRKDGRKSSS TSHDASETVR GHYKDYEDSV  420
GAWQHQATRS SGDSQVEGTD EMSPMSKRSR REAKVPGKLL PLLECLRAIS AHKFGSIFKH  480
RLESQDNLYY QSMIRRHVDL AMVRSRLEEG SYSGSVEFFR DLLLVFNNAL VYYPKYSPES  540
GAAYVLRELA TKEMTTIFQT EALLKQEGPS TRKREPRKLP EFSLSAKPNP TPMVSFRKRN  600
ASTSHGEYQV SGPKGAHSTL EQSSPCVIQV QQPQQAEKRK EDETKDDKVK GNKIGEHKVV  660
ESSASPSMTQ ILEKQREQKT DAAKLRTAAN SSAGNASGQS KLDKFAVESK ERIRDTQYHG  720
EPIMTSVNNN HQTKKTTINN KIELKKGPSS KHDLEKNSSD LLAPMKSSSG FFRAKKSSAS  780
TAEPIKSSSH IIETNKSSGN IAKPIKSSNT VEQERISSNA IRRGRELKNK EQQDNLSLKP  840
PLKQPLASTT TTTSTTHEQP LIKRGVGRPP KHAKQASQQH KSQQPLGQKQ QVPELKATES  900
ELLLPRPRKR SRT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT111608	0.0	BT111608.1 Picea glauca clone GQ03301_E02 mRNA sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44430.1	4e-24	DNA-binding bromodomain-containing protein