PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PSME_00034758-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 310aa MW: 34467.2 Da PI: 7.501 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.8 | 0.00022 | 175 | 250 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC................................TTS-.STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkas.............................kapskK.lsKaeiLekAveYIksLq 55 + RR++i +++ L++l+P +s k+ + Ka +L + ++Y++sLq PSME_00034758-RA 175 KVRREKISERMKFLQDLVPGCSkvvhdicvlffsdhidcfakwifhaahlnKGLCLQaTGKAVMLDEIINYVQSLQ 250 67******************999**************************996666666889*************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.474 | 165 | 249 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.67E-10 | 175 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-10 | 178 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-10 | 229 | 263 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.67E-10 | 231 | 268 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 310 aa Download sequence Send to blast |
MYHTRAERAE RLSCFGVGGG SLNLNESASA PFHRSVIDNS AMSRIPRPNM AELTKVSDTS 60 LSKEEFCAAE TGVRKARRLS RSSTPGHGTL GNESDDAEVS TAHEEYSSSD QNTSEAAPNA 120 FNGRKRKQMQ KDKGKDFASL QAEKETQITE AVDGLKGMKY KTVEGVKEKD DVKYKVRREK 180 ISERMKFLQD LVPGCSKVVH DICVLFFSDH IDCFAKWIFH AAHLNKGLCL QATGKAVMLD 240 EIINYVQSLQ QQVEFLSMKL AAVNPWMEFN VEGILAKDAS PVIISCRKGG TSIEDLTEKY 300 LDMIIKVAFL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT113151 | 0.0 | BT113151.1 Picea glauca clone GQ03326_F21 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LLM2 | 4e-44 | B8LLM2_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68920.3 | 5e-32 | bHLH family protein |