PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00034738-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HSF
Protein Properties Length: 201aa    MW: 22631.7 Da    PI: 8.241
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00034738-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind95.84.5e-30541442101
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl k+y++++d++++++i   e++nsfvv+++eef+ +vL +yF hsnf+SFvRQL++YgF+k+ + +          eF +k Fkkg+k+ll
  PSME_00034738-RA  54 FLVKTYRLVDDPSIDHIIPSRERQNSFVVWNPEEFSASVLLSYFNHSNFSSFVRQLDTYGFRKIVRGN---------CEFGKKLFKKGQKHLL 137
                       9***************************************************************9988.........67************** PP

                       XXXXXXX CS
      HSF_DNA-bind  95 ekikrkk 101
                       ++i+r+k
  PSME_00034738-RA 138 SHIQRRK 144
                       *****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.3E-4250143IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.0E-3152143IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.21E-2752143IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.5E-125477IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.4E-2554143IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-1292104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-12105117IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MDKLTPSTAM DSKNVYTPHG LPTALDHEAL NTGGFLMGGS GGFMDVGRLV AAPFLVKTYR  60
LVDDPSIDHI IPSRERQNSF VVWNPEEFSA SVLLSYFNHS NFSSFVRQLD TYGFRKIVRG  120
NCEFGKKLFK KGQKHLLSHI QRRKFSSASH AEYDKSASIY HSISSIVVQD YEVPAADPSL  180
LEEKDILRRN NSLLLSEISC W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-18341436129Heat shock factor protein 1
5d5v_B1e-18341436129Heat shock factor protein 1
5d5v_D1e-18341436129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020583395.12e-42heat stress transcription factor B-4b-like
TrEMBLH9WUJ33e-56H9WUJ3_PINTA; Uncharacterized protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.16e-39heat shock transcription factor B4