PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00034712-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | HB-other | ||||||||
Protein Properties | Length: 238aa MW: 26687.8 Da PI: 9.9473 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.1 | 3.6e-19 | 23 | 81 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+++Le+++ ++++p+a +r++L +++ +++ +q+kvWFqNrR +ek+ PSME_00034712-RA 23 KYVRYTEEQVQALEKFYSECPKPNAFRRQQLIRECpllsNIEPKQIKVWFQNRRCREKQ 81 5678*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.175 | 18 | 82 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.3E-15 | 20 | 86 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.69E-17 | 22 | 86 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.51E-15 | 23 | 83 | No hit | No description |
Pfam | PF00046 | 9.9E-17 | 23 | 81 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-18 | 25 | 81 | IPR009057 | Homeodomain-like |
Pfam | PF01852 | 9.6E-5 | 181 | 236 | IPR002913 | START domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MSAEDLMAVA RGKDGKYGFD SGKYVRYTEE QVQALEKFYS ECPKPNAFRR QQLIRECPLL 60 SNIEPKQIKV WFQNRRCREK QRKEATRLLA LNEKLKAMNK VLVKQNDNLS KQAFQFVCQN 120 NFLRRQLKLL KEQSTKLDGS KDALVTTEIS SISRLVSGLR KHRVPQAPQC DVNPAWLLAF 180 AEEALSEFLA KATGTGIDWI QIPGMKPGPD SIGIVAVGHG CDGAAARACS LVGMESSR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}. | |||||
UniProt | Probable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}. | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ391917 | 0.0 | HQ391917.1 Picea glauca class III homeodomain leucine zipper protein (HB6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008791633.1 | 2e-93 | homeobox-leucine zipper protein ATHB-15-like | ||||
Refseq | XP_029119049.1 | 2e-93 | homeobox-leucine zipper protein ATHB-15 isoform X2 | ||||
Swissprot | Q39123 | 4e-86 | ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8 | ||||
Swissprot | Q9ZU11 | 4e-86 | ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15 | ||||
TrEMBL | E7DX27 | 1e-157 | E7DX27_PICGL; Class III homeodomain leucine zipper protein | ||||
STRING | PGSC0003DMT400074932 | 8e-93 | (Solanum tuberosum) | ||||
STRING | XP_008791633.1 | 9e-93 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32880.1 | 4e-80 | homeobox gene 8 |