PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00034285-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 369aa    MW: 41379.4 Da    PI: 8.2634
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00034285-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.28.1e-131462148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+ Ed +l ++++ +G    W++ a++ g++R +++c++rw++yl
  PSME_00034285-RA 14 RGAWTKKEDMILSEYIRVHGHAcGWSKLAQKAGLKRAGNSCRLRWLNYL 62
                      89******************8899*********99************97 PP
2Myb_DNA-binding54.33e-1768113148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ ++eEd+l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  PSME_00034285-RA  68 RGKISPEEDDLIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 113
                       7999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.748962IPR017930Myb domain
SuperFamilySSF466893.1E-2512109IPR009057Homeodomain-like
SMARTSM007178.2E-91364IPR001005SANT/Myb domain
PfamPF002491.2E-111462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-201569IPR009057Homeodomain-like
CDDcd001672.64E-71662No hitNo description
PROSITE profilePS5129426.94963117IPR017930Myb domain
SMARTSM007179.0E-1767115IPR001005SANT/Myb domain
PfamPF002496.3E-1668113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2570117IPR009057Homeodomain-like
CDDcd001678.53E-1372113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MGRAPCCSTE GLNRGAWTKK EDMILSEYIR VHGHACGWSK LAQKAGLKRA GNSCRLRWLN  60
YLHPDIKRGK ISPEEDDLII RLHRLLGNRW SLIAGRLPGR TDNEIKNYWN THLGRRLLLM  120
NKTPPNTPQN IKKRPKSPSP VQNHVIKTTP VKITAAVNLC KMVRPNASNN RGSDEAFKLF  180
KVKETTESIA FAMSDVNLVE AQARNSTTCS IMSSLADEET PHSDQFAVDT VALAESSLDL  240
TDLSSLHWNL LFPPLYYSTE FVLEEFYRAA AAEMNEFQDK DNVQHIKSLT VDDLEGTEEF  300
YANTEPTLFL SVLWTLLVSA LVDAPPECTC GCPYMDAPAR ARLERSANAH VECSMKRLPK  360
GAPPKMTPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-231211725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541301.11e-62transcription factor MYB23
RefseqXP_028197056.11e-62transcription factor MYB23-like
TrEMBLA0A167V9011e-108A0A167V901_PICAB; Transcription factor MYB30
STRINGGLYMA13G16890.15e-62(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.11e-61myb domain protein 3