PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00034248-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 776aa    MW: 87771.4 Da    PI: 6.7193
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00034248-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.81.8e-11228263441
                       S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
   Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 
                       WT+eEd +l++av ++G   W+++a  ++  Rt+ qc+
  PSME_00034248-RA 228 WTKEEDAKLKEAVSLHGHC-WAKVALFVP-PRTDSQCQ 263
                       *****************99.*********.9******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.1E-7224270IPR001005SANT/Myb domain
SuperFamilySSF466895.76E-9226263IPR009057Homeodomain-like
PROSITE profilePS5129410.506228270IPR017930Myb domain
PfamPF002492.6E-10228263IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-11228263IPR009057Homeodomain-like
CDDcd001671.77E-10228264No hitNo description
PfamPF028372.4E-13250322IPR006104Glycosyl hydrolases family 2, sugar binding domain
SuperFamilySSF497851.02E-14261322IPR008979Galactose-binding domain-like
Gene3DG3DSA:2.60.120.2604.7E-20264311IPR008979Galactose-binding domain-like
Gene3DG3DSA:2.60.40.3208.8E-29312368IPR013812Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain
SuperFamilySSF493032.13E-14324454IPR006102Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich
PfamPF007032.0E-10324454IPR006102Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich
Gene3DG3DSA:2.60.40.3208.8E-29405452IPR013812Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain
SuperFamilySSF514451.83E-5451490IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.804.4E-7453504IPR013781Glycoside hydrolase, catalytic domain
PfamPF028362.8E-8461508IPR006103Glycoside hydrolase family 2, catalytic domain
PfamPF007821.4E-7569649IPR000340Dual specificity phosphatase, catalytic domain
Gene3DG3DSA:3.90.190.103.5E-12572650IPR029021Protein-tyrosine phosphatase-like
SuperFamilySSF527992.36E-13584664IPR029021Protein-tyrosine phosphatase-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006470Biological Processprotein dephosphorylation
GO:0003677Molecular FunctionDNA binding
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008138Molecular Functionprotein tyrosine/serine/threonine phosphatase activity
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MNTPDICNLL LEVQRQNNHS TEYLPANVHA LALAMVNAAF DRGSMDNLAA VVLALDSTTC  60
PAQSYSQRGS SLQKKPNFEI DKEENVDDLD SDASSTYQMT KKSKHQILAN MPGMLIKGRQ  120
KSFNHYHLIE NLDDYKGYVF LTPQKDIINS YDGFQAFPEG VVPLHREWQL DLYRDQDLCL  180
SFQLVSEDTS SLIISLILYI EENHGTRMAI QFLINLNNQW CLPKMDGWTK EEDAKLKEAV  240
SLHGHCWAKV ALFVPPRTDS QCQDSRLPAE FEITEHCYQP GSCKENVLAV QVMRWSDGSY  300
LEDQDHWRLS GIHRDVILLS KPQVFISDYC FKSHMVEDFS CASIQVELLV EAQHQTVVSG  360
ELALYSAEAF VCETEKCCID RYQSDLHSTS SAWLQPSQIV GANIGSQGCG LLNGKIEKPK  420
LWSAEHPHLY TLVVMLKDPS GNMIDCEACQ VGIREISRRP KELLVNGKPI LTYGVNRHEH  480
HPRVGKTNIE SCMIKDHGLA SENNNSNRFK SVLGIAGQTE EISSLVGDQY GEVPVLCNSS  540
DKKVIGKRMK LRDKARLVNQ KLGHPEMQFT TAMHMNSNDL EVDSVDLRRK LPFSVGVLYR  600
LLRRNHRVFV TCTTGLDRSP ACVIAYLHWI QDVTLQDALD FVTSLHPCVP DRCMLHKLFI  660
LEQVGEIPSV VTMISSNLGT LSQCSSQFVS KYRRPRRVER LWLQYTGTTV GLAVCSAWLL  720
CHNRWMSSTD LDDWIRQGKG SIVAPLTFKF VCDAQIEAPT IIRSHLHNRS CRLVVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1f4a_A1e-36263504161381BETA-GALACTOSIDASE
1f4a_B1e-36263504161381BETA-GALACTOSIDASE
1f4a_C1e-36263504161381BETA-GALACTOSIDASE
1f4a_D1e-36263504161381BETA-GALACTOSIDASE
1f4h_A1e-36263504161381BETA-GALACTOSIDASE
1f4h_B1e-36263504161381BETA-GALACTOSIDASE
1f4h_C1e-36263504161381BETA-GALACTOSIDASE
1f4h_D1e-36263504161381BETA-GALACTOSIDASE
4v45_E1e-36263504163383Beta-Galactosidase
4v45_F1e-36263504163383Beta-Galactosidase
4v45_G1e-36263504163383Beta-Galactosidase
4v45_H1e-36263504163383Beta-Galactosidase
4v45_I1e-36263504163383Beta-Galactosidase
4v45_J1e-36263504163383Beta-Galactosidase
4v45_K1e-36263504163383Beta-Galactosidase
4v45_L1e-36263504163383Beta-Galactosidase
4v45_M1e-36263504163383Beta-Galactosidase
4v45_N1e-36263504163383Beta-Galactosidase
4v45_O1e-36263504163383Beta-Galactosidase
4v45_P1e-36263504163383Beta-Galactosidase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1119385e-93BT111938.1 Picea glauca clone GQ03307_P08 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.33e-07myb domain protein 4r1