PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00034190-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 383aa MW: 43987.9 Da PI: 4.7106

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00034190-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	130.6	1.2e-40	92	218	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 pGfrF Pt+eel+++yLkk+++g + l+l+ +i++v++y+++Pw+Lp ++ +e++w+fF++rd++++ r++r+t sg+Wkatg+d++v PSME_00034190-RA 92 PGFRFYPTEEELLSFYLKKRITGCDqLNLDIIIPTVQLYHYDPWELPgFVHYVGERQWFFFVPRDHNKPC-PRPSRMTVSGFWKATGSDRAVR 183 9******************99875777667***********666777999******9985.8******************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + +glkk+Lvfykg+ap +++tdW+m+eyr+ PSME_00034190-RA 184 NELLQCIGLKKILVFYKGKAPCAQRTDWIMNEYRM 218 99999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-44	86	239	IPR003441	NAC domain
PROSITE profile	PS51005	47.918	90	239	IPR003441	NAC domain
Pfam	PF02365	7.3E-22	92	218	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MRCDPCNDGM RCDTFDDATR RDAHDDAMIV MRCDACEDAA RCDARDDVKR CDSHDDVMIC 60 DVRDNATRCD VMLMMMYRDT MFVKGEEIMD LPGFRFYPTE EELLSFYLKK RITGCDQLNL 120 DIIIPTVQLY HYDPWELPGF VHYVGERQWF FFVPRDHNKP CPRPSRMTVS GFWKATGSDR 180 AVRNELLQCI GLKKILVFYK GKAPCAQRTD WIMNEYRMPD SRLSAPKKTD IVLCRIYRKA 240 ASNKSTEHPA TQDYLDKEEP VVSGDNYGEK SHSVTLDHHD SYQLSNPVEK SDVFSLHYNE 300 DDEGVGSSDP GKSNVKEDSF FDCLEPIMEP IIFSEDTTVL KTPTACNPAQ LELPKLSMDS 360 WLSQPISTYS LLPTPLPIDF PLP

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MRCDPCNDGM RCDTFDDATR RDAHDDAMIV MRCDACEDAA RCDARDDVKR CDSHDDVMIC  60
DVRDNATRCD VMLMMMYRDT MFVKGEEIMD LPGFRFYPTE EELLSFYLKK RITGCDQLNL  120
DIIIPTVQLY HYDPWELPGF VHYVGERQWF FFVPRDHNKP CPRPSRMTVS GFWKATGSDR  180
AVRNELLQCI GLKKILVFYK GKAPCAQRTD WIMNEYRMPD SRLSAPKKTD IVLCRIYRKA  240
ASNKSTEHPA TQDYLDKEEP VVSGDNYGEK SHSVTLDHHD SYQLSNPVEK SDVFSLHYNE  300
DDEGVGSSDP GKSNVKEDSF FDCLEPIMEP IIFSEDTTVL KTPTACNPAQ LELPKLSMDS  360
WLSQPISTYS LLPTPLPIDF PLP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-40	92	242	19	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-40	92	242	19	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-40	92	242	19	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-40	92	242	19	168	NO APICAL MERISTEM PROTEIN
4dul_A	1e-40	92	242	19	168	NAC domain-containing protein 19
4dul_B	1e-40	92	242	19	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008791987.1	9e-58	NAC domain-containing protein 22-like
Swissprot	Q10S65	6e-51	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A075M5N5	1e-135	A0A075M5N5_9SPER; NAC domain protein
STRING	Pavir.Db00028.1.p	1e-58	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	1e-52	NAC domain containing protein 35

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]