PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00034189-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 430aa MW: 49101.6 Da PI: 4.8767

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00034189-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	134.7	6.2e-42	148	274	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 pGfrF Pt+eel+++yLkk+v+g + l+l+ +i++v++y+++Pw+Lp ++ +e++w+fF++rd++++ r++r+t sgyWkatg+d++v PSME_00034189-RA 148 PGFRFYPTEEELLSFYLKKRVTGCDqLNLDIIIPTVQLYHYDPWELPgLVHYVGERQWFFFVPRDHNKS-CPRPTRMTVSGYWKATGSDRPVR 239 9******************99875777667***********656677999*****9876.68******************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + +glkk+Lvfykg+ap g++tdW+m+eyr+ PSME_00034189-RA 240 NELLQSIGLKKILVFYKGKAPCGQRTDWIMNEYRM 274 99999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-45	145	295	IPR003441	NAC domain
PROSITE profile	PS51005	48.98	146	295	IPR003441	NAC domain
Pfam	PF02365	2.4E-22	148	274	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MLVMMRCDPH NDGMRCDAFD DATSCDAHGD VMRCNDHDDA MRCDAREDVA RCDARDDVKI 60 CDSCDDVMIC DVRDNVTRCD TMLMMMNLRF RVLLGGGTER SGFTLPHVSR TPGGRNGEKE 120 FALSRTPRLS EEIYNDWKVK GEEIMDLPGF RFYPTEEELL SFYLKKRVTG CDQLNLDIII 180 PTVQLYHYDP WELPGLVHYV GERQWFFFVP RDHNKSCPRP TRMTVSGYWK ATGSDRPVRN 240 ELLQSIGLKK ILVFYKGKAP CGQRTDWIMN EYRMPDSRLS APKKTDIVLC RIYRKAASNK 300 SMEHPATQDY LDKEEPVVSG DNYGEKSHSV TLDHDSYQLS NPVEKSDVFS LHYNVDDEGV 360 GYSDPGKSNV KEDSLFECLE PIMEPIIFSE ETTVLKTPTA CNPAQLELPK PADIDLFSSA 420 YPIADRFSIP

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MLVMMRCDPH NDGMRCDAFD DATSCDAHGD VMRCNDHDDA MRCDAREDVA RCDARDDVKI  60
CDSCDDVMIC DVRDNVTRCD TMLMMMNLRF RVLLGGGTER SGFTLPHVSR TPGGRNGEKE  120
FALSRTPRLS EEIYNDWKVK GEEIMDLPGF RFYPTEEELL SFYLKKRVTG CDQLNLDIII  180
PTVQLYHYDP WELPGLVHYV GERQWFFFVP RDHNKSCPRP TRMTVSGYWK ATGSDRPVRN  240
ELLQSIGLKK ILVFYKGKAP CGQRTDWIMN EYRMPDSRLS APKKTDIVLC RIYRKAASNK  300
SMEHPATQDY LDKEEPVVSG DNYGEKSHSV TLDHDSYQLS NPVEKSDVFS LHYNVDDEGV  360
GYSDPGKSNV KEDSLFECLE PIMEPIIFSE ETTVLKTPTA CNPAQLELPK PADIDLFSSA  420
YPIADRFSIP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-40	148	298	19	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-40	148	298	19	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-40	148	298	19	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-40	148	298	19	168	NO APICAL MERISTEM PROTEIN
3swm_A	1e-40	148	298	22	171	NAC domain-containing protein 19
3swm_B	1e-40	148	298	22	171	NAC domain-containing protein 19
3swm_C	1e-40	148	298	22	171	NAC domain-containing protein 19
3swm_D	1e-40	148	298	22	171	NAC domain-containing protein 19
3swp_A	1e-40	148	298	22	171	NAC domain-containing protein 19
3swp_B	1e-40	148	298	22	171	NAC domain-containing protein 19
3swp_C	1e-40	148	298	22	171	NAC domain-containing protein 19
3swp_D	1e-40	148	298	22	171	NAC domain-containing protein 19
4dul_A	1e-40	148	298	19	168	NAC domain-containing protein 19
4dul_B	1e-40	148	298	19	168	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A075M5N5	1e-130	A0A075M5N5_9SPER; NAC domain protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	1e-53	NAC domain containing protein 35