PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00034151-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 533aa    MW: 59899.5 Da    PI: 9.2246
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00034151-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.2e-15453148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                      r+rW +eEd ll  +vkq+G++ W++++++mg  + R +k+c +rw +yl
  PSME_00034151-RA  4 RQRWQPEEDALLRTYVKQYGPREWNLVSQRMGktLDRDAKSCLERWKNYL 53
                      89**********************************************97 PP

2Myb_DNA-binding34.35.6e-1159103147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +g+ T+eE+ l + + +++G++ Wk+Ia++++ gRt+k +  +w  +
  PSME_00034151-RA  59 KGSLTEEEQSLVISLQAKYGNK-WKKIAAEVP-GRTAKRLGKWWEVF 103
                       6788******************.*********.*****999999766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.582157IPR017930Myb domain
SMARTSM007178.1E-13355IPR001005SANT/Myb domain
SuperFamilySSF466894.4E-21498IPR009057Homeodomain-like
CDDcd001673.59E-9653No hitNo description
Gene3DG3DSA:1.10.10.602.0E-20660IPR009057Homeodomain-like
PfamPF139211.0E-13769No hitNo description
PROSITE profilePS5129417.99158108IPR017930Myb domain
SMARTSM007179.4E-1058106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-1561108IPR009057Homeodomain-like
CDDcd001675.08E-763104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MKERQRWQPE EDALLRTYVK QYGPREWNLV SQRMGKTLDR DAKSCLERWK NYLKPGIKKG  60
SLTEEEQSLV ISLQAKYGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQLKE RRKERQNLDS  120
ANSREGGKYD HILETFAEKY VQKNICPTSL PPILMPCPSP SPLLTLSVPT GSTYADNICL  180
TNVKTTPSST GPIVSQMANL TGSMGLSLPA VKGKVPSARE IEPRLTLESL GSTRPMLEPE  240
LALQCSASAM DLELTPTYHG TSPAAVDAAS SLPPWMSNVP TAQVPASGGS DVKTTVSTFI  300
LEKETLFPSK SIHLNSSPSV SLSLSPSSSD PVVSSGSASP ASEVIAPRSW LQDTMRHQEI  360
INGVARGVAK EKKVNLPWCA LEKQAGTSSF DPNLASGKQA MDNLIMQQLP TFLQYCKDIE  420
EGRQSWFMHK KEATWRLSRL EQQLESEKAR KRREKIEEVG AKIRALREEE ITYLDKLETE  480
CRDQLSSLQR DAEMKEAKMM ELWASKHLQL TKFVEQMLYQ FPDAQRLFSK ETH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-15792789C-Myb DNA-Binding Domain
1msf_C4e-15792789C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1449454RKRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for normal cell differentiation. Interacts directly with asymmetric leaves 2 (AS2) to repress the knox homeobox genes. {ECO:0000269|PubMed:10102816, ECO:0000269|PubMed:12750468, ECO:0000269|PubMed:9655808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1060620.0BT106062.1 Picea glauca clone GQ02902_D24 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075224.16e-79protein rough sheath 2 homolog
SwissprotQ9S7B23e-68RS2_MAIZE; Protein rough sheath 2
TrEMBLD5ABT40.0D5ABT4_PICSI; Uncharacterized protein
STRINGXP_009784773.15e-76(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.13e-62MYB family protein