PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PSME_00034151-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 533aa MW: 59899.5 Da PI: 9.2246 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.4 | 2.2e-15 | 4 | 53 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd ll +vkq+G++ W++++++mg + R +k+c +rw +yl PSME_00034151-RA 4 RQRWQPEEDALLRTYVKQYGPREWNLVSQRMGktLDRDAKSCLERWKNYL 53 89**********************************************97 PP | |||||||
2 | Myb_DNA-binding | 34.3 | 5.6e-11 | 59 | 103 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T+eE+ l + + +++G++ Wk+Ia++++ gRt+k + +w + PSME_00034151-RA 59 KGSLTEEEQSLVISLQAKYGNK-WKKIAAEVP-GRTAKRLGKWWEVF 103 6788******************.*********.*****999999766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.582 | 1 | 57 | IPR017930 | Myb domain |
SMART | SM00717 | 8.1E-13 | 3 | 55 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.4E-21 | 4 | 98 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.59E-9 | 6 | 53 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-20 | 6 | 60 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.0E-13 | 7 | 69 | No hit | No description |
PROSITE profile | PS51294 | 17.991 | 58 | 108 | IPR017930 | Myb domain |
SMART | SM00717 | 9.4E-10 | 58 | 106 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-15 | 61 | 108 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.08E-7 | 63 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 533 aa Download sequence Send to blast |
MKERQRWQPE EDALLRTYVK QYGPREWNLV SQRMGKTLDR DAKSCLERWK NYLKPGIKKG 60 SLTEEEQSLV ISLQAKYGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQLKE RRKERQNLDS 120 ANSREGGKYD HILETFAEKY VQKNICPTSL PPILMPCPSP SPLLTLSVPT GSTYADNICL 180 TNVKTTPSST GPIVSQMANL TGSMGLSLPA VKGKVPSARE IEPRLTLESL GSTRPMLEPE 240 LALQCSASAM DLELTPTYHG TSPAAVDAAS SLPPWMSNVP TAQVPASGGS DVKTTVSTFI 300 LEKETLFPSK SIHLNSSPSV SLSLSPSSSD PVVSSGSASP ASEVIAPRSW LQDTMRHQEI 360 INGVARGVAK EKKVNLPWCA LEKQAGTSSF DPNLASGKQA MDNLIMQQLP TFLQYCKDIE 420 EGRQSWFMHK KEATWRLSRL EQQLESEKAR KRREKIEEVG AKIRALREEE ITYLDKLETE 480 CRDQLSSLQR DAEMKEAKMM ELWASKHLQL TKFVEQMLYQ FPDAQRLFSK ETH |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 4e-15 | 7 | 92 | 7 | 89 | C-Myb DNA-Binding Domain |
1msf_C | 4e-15 | 7 | 92 | 7 | 89 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 449 | 454 | RKRREK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor required for normal cell differentiation. Interacts directly with asymmetric leaves 2 (AS2) to repress the knox homeobox genes. {ECO:0000269|PubMed:10102816, ECO:0000269|PubMed:12750468, ECO:0000269|PubMed:9655808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT106062 | 0.0 | BT106062.1 Picea glauca clone GQ02902_D24 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027075224.1 | 6e-79 | protein rough sheath 2 homolog | ||||
Swissprot | Q9S7B2 | 3e-68 | RS2_MAIZE; Protein rough sheath 2 | ||||
TrEMBL | D5ABT4 | 0.0 | D5ABT4_PICSI; Uncharacterized protein | ||||
STRING | XP_009784773.1 | 5e-76 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G37630.1 | 3e-62 | MYB family protein |