PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00034019-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family CPP
Protein Properties Length: 278aa    MW: 31107.7 Da    PI: 9.2435
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00034019-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR42.99.4e-14192231242
               TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                       ++k+CnCk+s+Clk+YCeCfa+g++C+  C+C +C+N+ e+
  PSME_00034019-RA 192 KSKQCNCKNSRCLKLYCECFASGTYCDG-CNCVNCCNNVEN 231
                       789*************************.********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011149.5E-14191231IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163419.475192278IPR005172CRC domain
PfamPF036383.0E-10194228IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MWQDRRSRPS NNIEFNFKRK AGRRERRKNL RTRAAELYVQ AFEKPPVYEE ILPFIESLNL  60
ILFCSPNYCL IFPPFFAGFQ LLCSAIYKGS GTDLAGKISG SAIFRERTMV LQQLGDSSVQ  120
QQQQQVGDVP AKKLVRQLDF TSFYGGACAP ASSPASPEPP LRPAQPVLVK PESPRAPRPR  180
AVFDLKEGTP KKSKQCNCKN SRCLKLYCEC FASGTYCDGC NCVNCCNNVE NDAVRQEAVE  240
ATLERNPNAF RPKIASSPSA LRDNRVFTAL MVHVDSKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524396.18e-55protein tesmin/TSO1-like CXC 5
TrEMBLA0A0R0K5H42e-53A0A0R0K5H4_SOYBN; Uncharacterized protein
TrEMBLA0A4D6L9S51e-53A0A4D6L9S5_VIGUN; Lin-54 family
STRINGXP_008783312.13e-53(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.11e-34Tesmin/TSO1-like CXC domain-containing protein