PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00034018-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family CPP
Protein Properties Length: 423aa    MW: 45848.7 Da    PI: 5.7725
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00034018-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR51.81.6e-161857140
               TCR  1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
                      k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  PSME_00034018-RA 18 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNYE 57
                      589***********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163420.377158IPR005172CRC domain
SMARTSM011146.2E-201859IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-122156IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MLSYENQEDL GEQPLAGKHN KGCHCKKSGC LKKYCECFQA NILCSENCKC MDCKNYEGSE  60
ERRALFHGEH AASLSYAQLA ANAAISGTVM SVAYASPSPN KKRKTQELVL GQTPKEHGTH  120
RLTQALQANT IKCTSSAMNP PISSISIVRP TAPVGMPSTK VAYRSLLADV VQPDAVKELC  180
NLLLIVSEEA AKTCEEEKNL QDEDADRQTQ KGNDLGQNKE SKVLAVQNEE DTNRNTQDDR  240
LGADQGEKAV AGTTSSNCVD DCESDGGADS RKQRAVSPGT LALMCDEQDS LFMASTPSSK  300
IPSSMGSYNQ RATQIYAEQE RAVLTKFRDY LRELVTVGKW RATQYPEAVK AEPLVAGSMQ  360
IIPPTVVAPR VARPVPIVPE VLTVSSYPVS TEPVSTTTAF KACLPGRPLE NGDVEPAVET  420
KQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-16186783132Protein lin-54 homolog
5fd3_B5e-16186783132Protein lin-54 homolog
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1038190.0BT103819.1 Picea glauca clone GQ02802_K10 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.15e-88Tesmin/TSO1-like CXC domain-containing protein