PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00033877-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family G2-like
Protein Properties Length: 670aa    MW: 74452.5 Da    PI: 4.6886
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00033877-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.45.7e-27395448256
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                        +++Wt eLH+rFv+aveqL G +kA+P++ilelm+v++Lt+++++SHLQkYR++
  PSME_00033877-RA 395 IKVDWTAELHRRFVQAVEQL-GVDKAVPSRILELMGVNCLTRHNIASHLQKYRSH 448
                       5899****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.1E-627112No hitNo description
SuperFamilySSF521721.71E-527109IPR011006CheY-like superfamily
PROSITE profilePS5011014.12430149IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5129417.875391450IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-26392451IPR009057Homeodomain-like
SuperFamilySSF466891.22E-17393451IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-25394448IPR006447Myb domain, plants
PfamPF002492.4E-7397446IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0010638Biological Processpositive regulation of organelle organization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MKAADCAAKL AMLQVLEDCN LWKDFPKGLH VLVVDKDPAT LNDIKAKLES CRYRVTTFER  60
SEDAVTALTN PESSFHVALV EQAALGERLD GFHILDAENR KSIPTIKISL LSYLVMSNTD  120
NTDVMLRAFA AFSTAIEPPD DLQNVADEET LWKGEEGVLV IEGNRKQKGD VFGCEKFSAP  180
STPQQELTNR LYSTHENFDE SSVSDITHNF KNEMEETRQI EAVEMIPAED SASSSLDEVK  240
KELDISSTQA LIINEDGDTC TASNLNYPCD NTELDSCFDD FCMGMDGDLL SELDIDPDIF  300
ENFSLDDNEG LDISPYFLDD CEVQEKDLAE EEALLLAEVS KAEKQQLMTD IPDINNSAIS  360
SDISVKEESS SDDKKTNGRQ TSKSTSKTSQ GKRKIKVDWT AELHRRFVQA VEQLGVDKAV  420
PSRILELMGV NCLTRHNIAS HLQKYRSHRK HLLAREAEAA TWNHRKQLYA TTGNRARPWI  480
AQNGNPLIQP RPSLGFPPMA PASHAPFRPL HVWGHPTMDH SSVHMWQKQP MAAPTPWPAA  540
DGYFWQQPTA CTNPWDHNAP APGTPLYPQP LVRLPLAPVP GVPHFMPPVY NGEYYKTDNS  600
SAIHPVNIDV PAHLKSSSCH PSKEKVDAAI SEVLSNPWTP LPFGLKSPSM ESVMSELQRQ  660
GISNVPPASV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-15391446257ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00022PBMTransfer from AT2G20570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0709630.0BT070963.1 Picea sitchensis clone WS02762_D13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLC0PRL20.0C0PRL2_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.13e-64GBF's pro-rich region-interacting factor 1