PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00033394-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

LBD

Protein Properties

Length: 176aa MW: 19307.9 Da PI: 6.8963

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00033394-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.4	3.9e-41	18	115	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+C+++Cv+apyfp ++p+kfa+vh++FGasnv k+l++lp ++r da+ss+vyeA+ar+rdP+yG++g + ++qqql+q++++ PSME_00033394-RA 18 PCAACKLLRRRCTRECVFAPYFPPDEPQKFACVHRIFGASNVNKMLQDLPIDNRADAVSSMVYEAHARVRDPIYGSAGAVASMQQQLAQVQTQ 110 7******************************************************************************************** PP DUF260 94 lallk 98 +all+ PSME_00033394-RA 111 MALLQ 115 99886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.188	17	118	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.4E-40	18	115	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MNEAASAEAV MKSAVSTPCA ACKLLRRRCT RECVFAPYFP PDEPQKFACV HRIFGASNVN 60 KMLQDLPIDN RADAVSSMVY EAHARVRDPI YGSAGAVASM QQQLAQVQTQ MALLQLENLN 120 LRMQREMDHA LHSNITNVAS SSTTGRLTTI QGTSPSDVCQ QVRPFFLDAN DSTDSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-42	16	150	9	126	LOB family transfactor Ramosa2.1
5ly0_B	9e-42	16	150	9	126	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002985907.2	2e-56	LOB domain-containing protein 4
Swissprot	Q8LBW3	1e-51	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A067KK06	1e-54	A0A067KK06_JATCU; Uncharacterized protein
TrEMBL	D8SR44	3e-55	D8SR44_SELML; Uncharacterized protein (Fragment)
STRING	EFJ13084	5e-56	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	1e-46	LOB domain-containing protein 4

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]