PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00033079-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 124aa MW: 13554.2 Da PI: 4.8008 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 54.1 | 4.5e-17 | 43 | 97 | 47 | 101 |
DUF260 47 kalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 k++ e+r+da+ss+vyeA+a +rdPvyG++gv+ +lqqql+ l+++la +++++ PSME_00033079-RA 43 KDVASEHRDDAVSSMVYEARATLRDPVYGCAGVVCRLQQQLCDLQSQLAIAQAQI 97 678899********************************************99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 2.0E-14 | 43 | 94 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
IADVWSCGVT LYVNIKGYCD HERAGKWENK SGDPLCGLQD AEKDVASEHR DDAVSSMVYE 60 ARATLRDPVY GCAGVVCRLQ QQLCDLQSQL AIAQAQIFNL HCQQTNLLAF LRASNSSFGI 120 GGET |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT104771 | 1e-64 | BT104771.1 Picea glauca clone GQ02814_K04 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021734188.1 | 6e-25 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 5e-18 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A2Z7BKX0 | 6e-23 | A0A2Z7BKX0_9LAMI; LOB domain-containing protein 11-like | ||||
STRING | XP_004307415.1 | 1e-22 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 3e-11 | LOB domain-containing protein 1 |