PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00032709-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 418aa    MW: 47012.1 Da    PI: 5.8425
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00032709-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.5e-0832562348
                      -HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                      +W++Ia++++ gRt++++k+ w+++l
  PSME_00032709-RA 32 RWSAIASHLP-GRTDNEIKNLWNTHL 56
                      6*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.93E-83162IPR009057Homeodomain-like
PROSITE profilePS500906.5863256IPR017877Myb-like domain
CDDcd001678.11E-63256No hitNo description
Gene3DG3DSA:1.10.10.603.0E-123257IPR009057Homeodomain-like
PfamPF002494.0E-63256IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MAALIYSEVK NLSTIDKFIN IQNHPFLPCV FRWSAIASHL PGRTDNEIKN LWNTHLKKRL  60
LQRAVDPVTH GPRGHHVCSC YSHGEQANQR FQSHCCTSKS VKMSFKRKGM NSNESVARQH  120
LQDSTKTLQD QEASNSSPLI QETAHDQNMV NSDQREAGHY SLNTEENNSD SSRVHSTKAM  180
EFVSASAFGL YSTATDKEAQ SNCEKLAAVM PFDYIQTGEK IMPAVDYTSL HKSMYTDSLK  240
IILDDNGENS NSSAEYQVNW KPLAGNQQNL DSLRCGEFQE HDKAVYPDGN LAFGSSMLNN  300
NVYFPGHELS LWLAAAENNR PSDQFVAYSS SKVATVLSGQ QQNVKEDQLF VANFSVGQLL  360
EQRDQRTGTG TIMEDKSNIY NDRWPDMNLA DQEYCDNLVR QVDQLPFLET LFTIAGQT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0713064e-43BT071306.1 Picea sitchensis clone WS02822_M18 unknown mRNA.
GenBankBT1175334e-43BT117533.1 Picea glauca clone GQ03902_G23 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLC0PSI21e-150C0PSI2_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.23e-18myb domain protein 16