PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00032440-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 348aa    MW: 40258.4 Da    PI: 7.3201
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00032440-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.6e-08162207454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +h ++Er+RR +i++ f+ L +llP+       K +K ++L  +  Y+++L
  PSME_00032440-RA 162 NHMIAERNRRVKIKHHFSLLHSLLPHK-----SKRDKYSVLSNTSSYMSEL 207
                       5889**********************7.....69**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-13158228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.068158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-11162226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.57E-6162211No hitNo description
PfamPF000102.2E-6162207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-6164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MMATGDSGMM IQPNGQITAS RDSNADSMCI LDEAHFELPL YSTTETSWYS SSSEDMDGFY  60
QLDHGNISHG HRHAQSFNSA ANIVSPPQSS TLYSQSAFDS YLRPAQSLYV KTSRDNIMKR  120
CFKFLRKIDE KRRELHRLSQ SANIQEEHEF NAGPIQNKAA FNHMIAERNR RVKIKHHFSL  180
LHSLLPHKSK RDKYSVLSNT SSYMSELKHR VDELEQRNRA MEESLRINIS NKEECSSINQ  240
RHEEHQAALV NISDVVVLEQ SKKLPNHVDM RINVQIDPLS SPTNLIIVLL QQLRELQLEV  300
VSIEYNVQQF KLEANLLLTQ IKGHQWESSK WENVREVVRR TLAVNEWM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-