PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00032235-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family CPP
Protein Properties Length: 554aa    MW: 61028 Da    PI: 9.6318
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00032235-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR278.8e-091401671441
               TCR  14 lkkYCeCfaagkkCseeCkCedCkNkee 41 
                       +k+YCeCfaag++C e C+ ++C+Nk e
  PSME_00032235-RA 140 KKRYCECFAAGVYCVEPCTGQECFNKLE 167
                       699**********************976 PP
2TCR47.14.8e-15213251139
               TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                       ++k+gCnCkks ClkkYCeC++ag+ Cs+ C+Ce+ kN 
  PSME_00032235-RA 213 RHKRGCNCKKSMCLKKYCECYQAGVGCSDGCRCEGYKNV 251
                       589*******************************98885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163427.575132253IPR005172CRC domain
SMARTSM011140.0011134168IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-5141165IPR005172CRC domain
SMARTSM011141.8E-15213254IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.0E-11215250IPR005172CRC domain
SuperFamilySSF530983.04E-13401463IPR012337Ribonuclease H-like domain
Gene3DG3DSA:3.30.420.101.2E-12403461IPR012337Ribonuclease H-like domain
CDDcd061271.16E-15405459No hitNo description
PfamPF009294.6E-8405460IPR013520Exonuclease, RNase T/DNA polymerase III
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MLTSPKGSVI TQGMSPSSGV KETSSELVGS SLPVVNSGGN ILVGSNSNIA SGMVVSMVEK  60
TRIYHQELQS FGMSQIGVTR STTYFRSVTV GIKPLQSRLP LKSEERNLSP LGKKRPELLD  120
ISQQSPFSTG EEFSQSSPKK KRYCECFAAG VYCVEPCTGQ ECFNKLEYED MVLGTRQQIE  180
SRNPLAFAPK IVRGAYSPPT NGDECGETPS SARHKRGCNC KKSMCLKKYC ECYQAGVGCS  240
DGCRCEGYKN VYGKKEGTCG VSRYGGLFSI CRIQMIWRSI QHKSQLCSLL AFTKLSMQNI  300
GYSMRYIPFI HSLHLLSFQP AQLHKVASTF KSSAFGFPQS KQRGISKKSA PAGGNTVNKH  360
YMHTTTEKVG RKKCSPRRSK INEATDSPLK HSEGKNLSQN PIVMVFDLET TGLSYINDRI  420
IEFAAQDLVG GRHSTFQSLV NPGCFVTNER IHGISNQMVN RSNVPRYSTK LKTACYNKPE  480
YATATMRDER VAFILLADLV AVRHSNERLV GFSISQRAYA KLGSTPCTLI VISFSAYGSP  540
LVIRETMEIA DPMA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-141322512121Protein lin-54 homolog
5fd3_B5e-141322512121Protein lin-54 homolog
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1058570.0BT105857.1 Picea glauca clone GQ02829_G06 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.12e-54TESMIN/TSO1-like CXC 2