PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00031996-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 104aa    MW: 11745.3 Da    PI: 7.5591
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00031996-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-073252447
                      HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqky 47
                      W+ Ia+t++ gRt++q+k+ w+++
  PSME_00031996-RA  3 WSMIASTIP-GRTDNQIKNCWNTH 25
                      *********.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.662130IPR017930Myb domain
SuperFamilySSF466891.71E-8243IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.4E-12240IPR009057Homeodomain-like
CDDcd001674.03E-5326No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MSWSMIASTI PGRTDNQIKN CWNTHIKKKL LKEGVDPYTH LPIIPDHGSF GCSSENPVLP  60
KRRCKPSEDP GTYLWQRLSS TGHDHAYDED VNLDLSITLP SLRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34990.14e-17myb domain protein 32