PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00031964-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 319aa MW: 37074.1 Da PI: 5.3496 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.6 | 1.1e-16 | 20 | 67 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd lv++++++G g+W+ a+ g++Rt+k+c++rw +yl PSME_00031964-RA 20 KGPWTSEEDTVLVKYIRLHGEGRWNFLAKASGLKRTGKSCRLRWINYL 67 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 43.3 | 8.4e-14 | 73 | 116 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r + ++eE+ l+ +++ ++G++ W++Ia++++ gRt++++k++w++ PSME_00031964-RA 73 RSKISPEEERLINELHGRWGNR-WSRIAKRLP-GRTDNEIKNFWRT 116 56789*****************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.7 | 15 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.97E-29 | 18 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-14 | 19 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-14 | 20 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-22 | 21 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.16E-9 | 22 | 67 | No hit | No description |
PROSITE profile | PS51294 | 23.954 | 68 | 122 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-12 | 72 | 120 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-22 | 74 | 122 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-12 | 74 | 116 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.67E-9 | 77 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MENWWIACVS EEWDETETRK GPWTSEEDTV LVKYIRLHGE GRWNFLAKAS GLKRTGKSCR 60 LRWINYLRPD LKRSKISPEE ERLINELHGR WGNRWSRIAK RLPGRTDNEI KNFWRTRIKK 120 KIDPQAENRH RTGVHGENRS VQFERSKGSH FLGNSAEILS DLDSPECCSN FPRQNTEEIE 180 VETNVKTQYL QDDISSLVIP IREGNYECVL QREIIHGPSQ INDDGKPSVT LQEHLEGLVK 240 QNSLPFNFSV RSLATLISPE SFADEATHDN KIPTSFSCTT VASPEEFSDN ETYIDYSDVL 300 WNMDEEDDRF NRSRPSESL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-27 | 20 | 123 | 7 | 109 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting redundantly with MYB21 and MYB57 to control stamen filament elongation in the late developed flowers. Contributes with MYB21 to induction of MYB108 by jasmonate. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:16805732, ECO:0000269|PubMed:16972096, ECO:0000269|PubMed:19091873, ECO:0000269|PubMed:19325888, ECO:0000269|PubMed:21447791}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by jasmonate. {ECO:0000269|PubMed:16805732}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006470308.1 | 9e-57 | myb-related protein 305 isoform X1 | ||||
Swissprot | Q9SPG9 | 1e-54 | MYB24_ARATH; Transcription factor MYB24 | ||||
STRING | XP_006470308.1 | 4e-56 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G40350.1 | 6e-57 | myb domain protein 24 |
Publications ? help Back to Top | |||
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