PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00031962-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 308aa    MW: 35077.9 Da    PI: 4.9638
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00031962-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.7e-162268147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      +g+WT eEd +l+ +++++G g+W+  a+  g++Rt+k+c++rw++ 
  PSME_00031962-RA 22 KGPWTSEEDMKLITYIRLHGQGRWNFLAKAAGLKRTGKSCRLRWNNC 68
                      79*******************************************96 PP
2Myb_DNA-binding43.38.4e-1475118146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       r r T+eE+ l+++++ ++G++ W++Ia+ ++ gRt++++k+ w++
  PSME_00031962-RA  75 RSRITPEEERLIIELHGRWGNR-WSRIAESLP-GRTDNEIKNCWRT 118
                       6799******************.*********.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.6131769IPR017930Myb domain
SuperFamilySSF466892.92E-2919116IPR009057Homeodomain-like
SMARTSM007171.1E-142171IPR001005SANT/Myb domain
PfamPF002494.2E-152269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-232376IPR009057Homeodomain-like
CDDcd001671.06E-102467No hitNo description
PROSITE profilePS5129422.57770124IPR017930Myb domain
SMARTSM007174.0E-1474122IPR001005SANT/Myb domain
PfamPF002492.8E-1276118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2177123IPR009057Homeodomain-like
CDDcd001674.99E-1079118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MENGICWVTS TDEYEQKTRT RKGPWTSEED MKLITYIRLH GQGRWNFLAK AAGLKRTGKS  60
CRLRWNNCLR PDLKRSRITP EEERLIIELH GRWGNRWSRI AESLPGRTDN EIKNCWRTRI  120
KRKFNLQAEG RGSGMDADNR IDFEDSKGSN CLTTTSQIVS DLASAEPSSS FARQNTEEIE  180
VHTNKTPNLQ NDIWAQAIPV IEGNYDCLLQ GEIHGSSEDG QPGSALKEHC EGTENLFEKS  240
SLNNFSVRSL IATLISSDLF SSGATEHDKI PTSPDTFSND EYYIIDYSDV LWKMDEEDEC  300
FDSHSALL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28221257109B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016668340.14e-53PREDICTED: myb-related protein 305-like
STRINGGorai.006G030800.14e-52(Gossypium raimondii)
STRINGXP_006446527.13e-52(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.11e-51myb domain protein 21