PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00031866-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 301aa    MW: 32953.9 Da    PI: 7.1022
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00031866-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-161764148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT eEd +l+++++ +G+g+W++ a+  g+ R++k+c++rw +yl
  PSME_00031866-RA 17 KGPWTYEEDIRLLRYITIHGPGRWSALAKASGLQRCGKSCRLRWVNYL 64
                      79********************************************97 PP
2Myb_DNA-binding56.56.2e-1870115148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ T+eE+ +++d+++++G++ W++Ia++m+ gRt++++k++w++++
  PSME_00031866-RA  70 RGSITPEEERIILDLHARWGNR-WSLIAEKMP-GRTDNEIKNYWRSHM 115
                       7889******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.4241264IPR017930Myb domain
SuperFamilySSF466892.17E-3015111IPR009057Homeodomain-like
SMARTSM007176.9E-121666IPR001005SANT/Myb domain
PfamPF002493.6E-141764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-231871IPR009057Homeodomain-like
CDDcd001671.10E-91964No hitNo description
PROSITE profilePS5129427.19965119IPR017930Myb domain
SMARTSM007178.0E-1769117IPR001005SANT/Myb domain
PfamPF002496.0E-1670114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2572119IPR009057Homeodomain-like
CDDcd001671.08E-1274115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MSSKWSKSCE RAGKLKKGPW TYEEDIRLLR YITIHGPGRW SALAKASGLQ RCGKSCRLRW  60
VNYLRPDLKR GSITPEEERI ILDLHARWGN RWSLIAEKMP GRTDNEIKNY WRSHMRKKVS  120
ASHDSADSCE VNNITTSLPQ LVTASHAVMA NQALPPLTSS SSTEDNTENN LCINPQPNLV  180
ASHLLESAIN ANSLSCTDCS WEKQSGEEPI FRATHADAAN TALVSLKGEQ GEQDGLASCR  240
SLDQDSFSAI LCQLYSTIPG GGGGGDKATT MSAVAANSAY SSYNYDCDPT VLDISGLWNL  300
G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-321511925128MYB TRANSFORMING PROTEIN
1mse_C8e-32151192105C-Myb DNA-Binding Domain
1msf_C8e-32151192105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1089290.0BT108929.1 Picea glauca clone GQ03202_L06 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019180767.17e-54PREDICTED: transcription factor WER-like
TrEMBLB8LLD71e-166B8LLD7_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.12e-53myb domain protein 305