PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00031811-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

MYB

Protein Properties

Length: 398aa MW: 45047.1 Da PI: 5.8442

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00031811-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.4	2.8e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd +l+++++++G g+W++ ++ g R++k+c++rw +yl PSME_00031811-RA 14 KGPWTLEEDRKLIEYIQKHGFGNWRALPKQAGVMRCGKSCRLRWMNYL 61 79********************************************97 PP
2	Myb_DNA-binding	47.7	3.6e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++eE++++++++ lG++ W+tIa++++ gRt++++k+ w+++l PSME_00031811-RA 67 RGNLSPEEEQIIIQLHGILGNK-WSTIASYLP-GRTDNEIKNIWNTHL 112 7899****************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.701	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	9.17E-32	11	108	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	9.7E-17	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.0E-25	15	68	IPR009057	Homeodomain-like
CDD	cd00167	1.80E-12	16	61	No hit	No description
PROSITE profile	PS51294	25.253	62	116	IPR017930	Myb domain
SMART	SM00717	2.4E-13	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-13	67	112	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.6E-25	69	116	IPR009057	Homeodomain-like
CDD	cd00167	3.23E-10	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MGRIPCCDMM GVKKGPWTLE EDRKLIEYIQ KHGFGNWRAL PKQAGVMRCG KSCRLRWMNY 60 LRPDIKRGNL SPEEEQIIIQ LHGILGNKWS TIASYLPGRT DNEIKNIWNT HLKKRLPQRD 120 SGRNRRAHSS CFSTVPATGA VKNSLLKSPT MHISHSDHDF DQLLSSYSPN DYGGLQRIEN 180 NFHSNDFVQV CDEGPSFADA NEQLVPRVLD SAMFSISKES QSQMELSGSA EYSTGKDIID 240 DQQFVSNILL ETCSVDHSQT DDNRSANDYI KFLKQFLDID EESSVISPYE LHQDANATFT 300 IERDHFHIQE RTLQPHKCLP LENSSEDNIT AAGLFSWPYS PFSGNQSSHE IQTSFADSQA 360 SYSYSPNSSS SNSLHVNTPI SLSADFLVGL PEKLWQEF

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MGRIPCCDMM GVKKGPWTLE EDRKLIEYIQ KHGFGNWRAL PKQAGVMRCG KSCRLRWMNY  60
LRPDIKRGNL SPEEEQIIIQ LHGILGNKWS TIASYLPGRT DNEIKNIWNT HLKKRLPQRD  120
SGRNRRAHSS CFSTVPATGA VKNSLLKSPT MHISHSDHDF DQLLSSYSPN DYGGLQRIEN  180
NFHSNDFVQV CDEGPSFADA NEQLVPRVLD SAMFSISKES QSQMELSGSA EYSTGKDIID  240
DQQFVSNILL ETCSVDHSQT DDNRSANDYI KFLKQFLDID EESSVISPYE LHQDANATFT  300
IERDHFHIQE RTLQPHKCLP LENSSEDNIT AAGLFSWPYS PFSGNQSSHE IQTSFADSQA  360
SYSYSPNSSS SNSLHVNTPI SLSADFLVGL PEKLWQEF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-30	14	116	7	108	B-MYB

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	1e-65	myb domain protein 9