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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PSME_00031625-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 293aa MW: 32938.1 Da PI: 4.7166 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 22.6 | 2.5e-07 | 1 | 22 | 24 | 46 |
HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqk 46
W+ Ia+ ++ gRt++++k++w++
PSME_00031625-RA 1 WSQIAASLP-GRTDNEIKNYWNT 22
*********.***********97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF46689 | 2.2E-6 | 1 | 33 | IPR009057 | Homeodomain-like |
| CDD | cd00167 | 1.94E-5 | 1 | 22 | No hit | No description |
| PROSITE profile | PS51294 | 15.538 | 1 | 28 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 1.8E-10 | 1 | 25 | IPR009057 | Homeodomain-like |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 293 aa Download sequence Send to blast |
WSQIAASLPG RTDNEIKNYW NTCIKKNKKL KHLSADFSTK SNITSQSDRN CNINSASTHL 60 ARDTFRIFHS AEPFLDAMPE MFYSEPTIKT MDLGSSSVEK QYSSVDLDQN QFSIGPDSSN 120 NQLISDSPMW IDSNSTQTLH EIGDSLKEKL KINACSTQAA GITFLEDQNY ESLPEKSSHQ 180 SWPGHNSCSQ FNKPSFIWAA GFDQFCKVQS EADRDGYKDP LNSRYGEVNL GVPLNVNLRR 240 QKSDQLSQIG GGDQWNITQS LTRDGSGALE FECEDSADQL TFWPQEPYVQ SPY |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G01680.3 | 2e-10 | myb domain protein 55 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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