PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00031520-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 258aa MW: 29643.9 Da PI: 7.8265 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.6 | 2.5e-26 | 12 | 61 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ien +nrqvtfskR++g+ KKA+ELS+LC+aeva+iifss+gk yeyss PSME_00031520-RA 12 KIENLTNRQVTFSKRKAGLKKKAKELSILCGAEVALIIFSSSGKHYEYSS 61 69**********************************************96 PP | |||||||
2 | K-box | 42.8 | 2.3e-15 | 104 | 161 | 31 | 88 |
K-box 31 LqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 L r Rh GedLesLs++eLq+Le+qLe +++R+k+ +l e+++ + + +e + PSME_00031520-RA 104 LHRVFRHTTGEDLESLSVNELQNLEDQLEIVTSRVRKKRFQLTQEKLKAMTEEVEESR 161 67788************************************99988877766555544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.006 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.3E-38 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.19E-31 | 4 | 84 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.01E-41 | 4 | 81 | No hit | No description |
PRINTS | PR00404 | 8.5E-27 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-24 | 12 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.5E-27 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.5E-27 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 9.856 | 87 | 176 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 4.7E-12 | 104 | 159 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MRMGRGKIEI RKIENLTNRQ VTFSKRKAGL KKKAKELSIL CGAEVALIIF SSSGKHYEYS 60 SPCSSIEQIL EKYMTVSGSK LGEDQINTFM GGCVVKDDID FVGLHRVFRH TTGEDLESLS 120 VNELQNLEDQ LEIVTSRVRK KRFQLTQEKL KAMTEEVEES RRRLRYYEGF QEKKNDLYMF 180 SDCRGLGETV DDYPFCQLKD KNPIYLTSSA AVPPVLPVPP RLHETDYQYL DLQLGHSTNL 240 KTCPHLDLQL GYNTDMKN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 7e-18 | 3 | 77 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 7e-18 | 3 | 77 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 7e-18 | 3 | 77 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 7e-18 | 3 | 77 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9XGJ4 | 5e-41 | GGM13_GNEGN; MADS-box protein GGM13 | ||||
TrEMBL | Q9SEE0 | 1e-136 | Q9SEE0_PICAB; MADS-box transcription factor |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26310.1 | 4e-32 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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