PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00031462-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bZIP
Protein Properties Length: 517aa    MW: 57950.2 Da    PI: 7.7578
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00031462-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.96.8e-11222253334
                       XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeek 34 
                       + k  rr+++NReAAr+sR+RKka++++Le+ 
  PSME_00031462-RA 222 DAKTLRRLAQNREAARKSRLRKKAYVQQLETS 253
                       67999************************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.5E-8215266No hitNo description
SMARTSM003381.3E-7220292IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.151222266IPR004827Basic-leucine zipper domain
PfamPF001705.6E-8223253IPR004827Basic-leucine zipper domain
CDDcd147082.33E-20224276No hitNo description
SuperFamilySSF579595.38E-7224266No hitNo description
PROSITE patternPS000360227242IPR004827Basic-leucine zipper domain
PfamPF141441.7E-29318392IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
NKRSVQQKPR GSCADCYMAD SRSQQQVFNI QELASPSSSN CNKQPSYGML QGVISSTCPS  60
NNIASSAVDF FKDNPGAYDL GELDQALFSY LEGDNSALAQ KQCSGGNRSQ PTLNMFPSKP  120
MHASPQALSR ETSVSGAESF DSQSIRQTNT NSTYKRAPQQ PEFESPTNGK KSEVMQMPDM  180
GRNLINNPAT EKFNELEKEV KHEVNRRGPT SSSEPEGTKT PDAKTLRRLA QNREAARKSR  240
LRKKAYVQQL ETSRLKLAQI EQELQRARSQ GVFMGSNVFM TEQAHLNGNA AANGGLTAEA  300
AAFDLEYQRW QEEHHRHILD LRAALQEHLP DNDLRVFVDN FVSHYDDLLH VKMIGAKADV  360
FYMISGMWKT PAERCFMWMG GFRPSELLKI LLPYIEPLTE QQYQCICNLQ QSSLQAEEAF  420
SQGMEELQHS LTDTIAAGSL SSPSNMANYM GQMAMAMGKL ANLEILVRQA DSLRHQTLQQ  480
LNRVLTTRQS AKCFLAMGEY FSRLRALSSL WSARPRE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009611363.11e-176PREDICTED: transcription factor TGA2.3-like isoform X1
SwissprotQ52MZ21e-174TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A0K0M7410.0A0A0K0M741_PINTB; ZIP2 (Fragment)
STRINGXP_009611363.11e-176(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-121bZIP family protein