PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00031433-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family G2-like
Protein Properties Length: 370aa    MW: 41025 Da    PI: 7.0122
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00031433-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.53e-33269323155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       k+rlrWtpeLH+rFveav+qLGG+++AtPk +l+lm+ +gLt++hvkSHLQkYR+
  PSME_00031433-RA 269 KTRLRWTPELHDRFVEAVSQLGGADRATPKGVLKLMDSEGLTIYHVKSHLQKYRI 323
                       68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.394266326IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-31267324IPR009057Homeodomain-like
SuperFamilySSF466891.2E-17267323IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-24269324IPR006447Myb domain, plants
PfamPF002492.6E-9271322IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MKRQNLQGLN YCDGDTMVSL HAFPAPMASG ESCSSACSSH LLSYNLSPNC FVPTDYSVFS  60
SATSDKELSS STFVQPNVIS HMVRPVSTTF CTNFQSSKSI ASQQQQQQPL IYPPSKSPVQ  120
SQQSGVCEPA FFRDSSKSSG QDAGLGDLLC DFLSFPETGL ECIQPLENID SRIAPQYYPN  180
QSECHTWEDK FASPDDALRG GCWKEPANID NDPKTGLNTI YQTPTVSTTD VGLKLTQLQP  240
QQCRQIFVST VGTHLATSPT ASGTASSSKT RLRWTPELHD RFVEAVSQLG GADRATPKGV  300
LKLMDSEGLT IYHVKSHLQK YRIAKYIPKH AEDNWGRTQY KSHMAILDYK LDKTVWIVDN  360
QQQVAWKRFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-27269326259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-27269326259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-27269326158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-27269326158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-27269326158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-27269326158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-27269326259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-27269326259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-27269326259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-27269326259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-27269326259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-27269326259Protein PHOSPHATE STARVATION RESPONSE 1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.29e-29G2-like family protein