PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00031194-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 270aa MW: 30390.8 Da PI: 6.3141

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00031194-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	95.6	7.8e-30	16	95	1	81
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeelvv+yL+kk+++++l++ ++i+e+d+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nra++sg PSME_00031194-RA 16 LPPGFRFHPTDEELVVHYLNKKASSTPLPV-TIIAEIDLYKFDPWELPGKATFGEQEWYFFSPRDRKYPNGARPNRAATSG 95 79**************************.89***********8888999*******************88776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.41E-47	10	142	IPR003441	NAC domain
PROSITE profile	PS51005	32.056	16	165	IPR003441	NAC domain
Pfam	PF02365	8.4E-13	17	111	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MESPASFSGS HQQPQLPPGF RFHPTDEELV VHYLNKKASS TPLPVTIIAE IDLYKFDPWE 60 LPGKATFGEQ EWYFFSPRDR KYPNGARPNR AATSGPPKGI KTNWIMHEYR LADSGARTSS 120 FPNKKGSLRL DDWVLCRIYK KNGHSQRVQG AERDESPSVD EVMTSFPNIE QQNKLQLPKL 180 GPFSGLLETD DPFIEGLLND KAMDGNGNIS RLPHQVHSSN LSHNNFSNSN DNNSDCQFEV 240 VPKQEALAVD NENKFNSLKR TLSLATFGDE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	3e-55	13	147	17	174	NAC domain-containing protein 19
3swm_B	3e-55	13	147	17	174	NAC domain-containing protein 19
3swm_C	3e-55	13	147	17	174	NAC domain-containing protein 19
3swm_D	3e-55	13	147	17	174	NAC domain-containing protein 19
3swp_A	3e-55	13	147	17	174	NAC domain-containing protein 19
3swp_B	3e-55	13	147	17	174	NAC domain-containing protein 19
3swp_C	3e-55	13	147	17	174	NAC domain-containing protein 19
3swp_D	3e-55	13	147	17	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269\|PubMed:17124321}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT111167	1e-97	BT111167.1 Picea glauca clone GQ03233_M04 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006841705.1	4e-86	NAC transcription factor 56
Refseq	XP_015888238.2	2e-86	NAC transcription factor 25-like, partial
Swissprot	A0SPJ9	3e-70	NAM2_HORVV; NAC transcription factor NAM-2
TrEMBL	A0A0D6QYG7	7e-87	A0A0D6QYG7_ARACU; Uncharacterized protein
STRING	ERN03380	1e-85	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	2e-71	NAC domain containing protein 25

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]