PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00031160-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 217aa MW: 24523.7 Da PI: 10.1974 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.6 | 1.1e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd +l+++++ +G g+W++ ++ g+ R++k+c++rw +yl PSME_00031160-RA 14 KGAWTNEEDARLIQYIQAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 46.2 | 1.1e-14 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg ++++Ed+l+++++++lG++ W++Ia +++ gRt++++k++ +++ PSME_00031160-RA 67 RGHFSEDEDDLILRLHALLGNK-WSLIAGRLP-GRTDNEIKHYRNSH 111 799*******************.*********.*********98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.269 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.27E-27 | 11 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.67E-10 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.2E-23 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.8E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.993 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.8E-13 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.59E-9 | 70 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MGRAPCCLNA DRNKGAWTNE EDARLIQYIQ AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGHF SEDEDDLILR LHALLGNKWS LIAGRLPGRT DNEIKHYRNS HLRRKFIATG 120 FDRLTHRRFQ KNSRHHPSAT GNVRQRETAR SHELVEGLMF HYAKSEQVSD AGSGLARDEL 180 HPHLNVNLNL ELSISAGPSI ICHRAHSSVE GAGGRSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-28 | 7 | 116 | 20 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT117170 | 1e-177 | BT117170.1 Picea glauca clone GQ03814_D21 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013705104.1 | 1e-76 | transcription repressor MYB4-like | ||||
Swissprot | Q9SZP1 | 8e-75 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A9NTK0 | 1e-101 | A9NTK0_PICSI; Uncharacterized protein | ||||
STRING | Bo7g119670.1 | 9e-76 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 3e-77 | myb domain protein 4 |