PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00031117-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 270aa MW: 29749.8 Da PI: 8.558 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 84.9 | 1.1e-26 | 4 | 101 | 1 | 93 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C+++Cvl+p++ +++q+k++ +++k++G+s +++l+++ pe+ r+ +++sl+yeA+ r+ +P+yG++g++ ++++ + PSME_00031117-RA 4 SCNGCRVLRKGCSDSCVLRPCLhwirtAESQAKATIFLAKFYGRSGLVNLISSGPEHMRPGIFRSLLYEACGRMVNPIYGSLGLFCSGKWAEC 96 6*********************9999778899**********************************************************999 PP DUF260 89 qlkae 93 q+ +e PSME_00031117-RA 97 QAGVE 101 98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.293 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.8E-22 | 4 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSDSCV LRPCLHWIRT AESQAKATIF LAKFYGRSGL VNLISSGPEH 60 MRPGIFRSLL YEACGRMVNP IYGSLGLFCS GKWAECQAGV ESILRGTFGA VTQGDTAPSH 120 ILPIEAMPSA LHRTRGRGRL KGLSKSKHKV REGELAAISN HMDSSSKSDD SAALTNAFEK 180 VDNGKLHEKY GEKYSMFLRG KEVQEEFFAT QPQTQYSNDL CNLKTSPEPP RNAVELELTL 240 GSRGSSPSTP DKVSAGDLRW SEAHCEQWME |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002282602.1 | 8e-60 | PREDICTED: LOB domain-containing protein 40 | ||||
Refseq | XP_010263769.1 | 2e-59 | PREDICTED: LOB domain-containing protein 41-like | ||||
TrEMBL | A0A3G6J9E0 | 3e-59 | A0A3G6J9E0_PINTA; ASYMMETRIC LEAVES 2-like protein 37 | ||||
STRING | VIT_01s0011g03540.t01 | 3e-59 | (Vitis vinifera) | ||||
STRING | XP_010263769.1 | 7e-59 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67100.1 | 6e-58 | LOB domain-containing protein 40 |