PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00031114-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 268aa MW: 30620.4 Da PI: 9.2376

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00031114-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	104	2e-32	23	94	56	128
NAM 56 kewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ewyfFs+rdkky++g+++nrat+sgyWkatgkd+++ s +++ +g+kktLvfykgrap+g++tdWvmheyrl PSME_00031114-RA 23 LEWYFFSPRDKKYSNGTHTNRATESGYWKATGKDRKINS-NSSMIGTKKTLVFYKGRAPQGRRTDWVMHEYRL 94 49***********************************.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	38.357	1	117	IPR003441	NAC domain
SuperFamily	SSF101941	4.45E-38	21	117	IPR003441	NAC domain
Pfam	PF02365	1.0E-16	25	94	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MLQHLTLFLC LFADKSFFPN RYLEWYFFSP RDKKYSNGTH TNRATESGYW KATGKDRKIN 60 SNSSMIGTKK TLVFYKGRAP QGRRTDWVMH EYRLDETQFE GAAGVQDAFV LCRVFKKNGI 120 EPRANPTLQS ETSSETLNDR TDNGAPLNQW LQFLLDEPNP TYILTSPANV RHDLKVRSML 180 GGARLEQESL WPMYKIDNFS EGVDDLNFNQ ITSQIEPMLR KMASPNHSQH GSTKSKASSE 240 SREDTIKQEG MSKVLASLSS KKEALQES

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-33	14	118	61	169	NAC domain-containing protein 19
3swm_B	1e-33	14	118	61	169	NAC domain-containing protein 19
3swm_C	1e-33	14	118	61	169	NAC domain-containing protein 19
3swm_D	1e-33	14	118	61	169	NAC domain-containing protein 19
3swp_A	1e-33	14	118	61	169	NAC domain-containing protein 19
3swp_B	1e-33	14	118	61	169	NAC domain-containing protein 19
3swp_C	1e-33	14	118	61	169	NAC domain-containing protein 19
3swp_D	1e-33	14	118	61	169	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006374257.1	1e-53	NAC domain-containing protein 86 isoform X2
Refseq	XP_011047785.1	9e-54	PREDICTED: NAC domain-containing protein 86 isoform X2
Refseq	XP_026408740.1	5e-53	NAC domain-containing protein 86-like
TrEMBL	B8LLW8	1e-52	B8LLW8_PICSI; Uncharacterized protein
STRING	POPTR_0015s05450.1	4e-53	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	4e-52	NAC domain containing protein 57