PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00031112-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 171aa MW: 19261.7 Da PI: 4.5947 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 93.3 | 2.8e-29 | 33 | 128 | 5 | 100 |
DUF260 5 CkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 Ck+ r++C ++C++ f +++ +kf ++h++FGa nv+kl+++lp +++ da++s+vyeA ar++dPv G+vg i++lq q++ l+++++++ PSME_00031112-RA 33 CKMERKECLENCTILYRFVSNDLHKFSILHQVFGACNVIKLIQDLPSDQKIDAVNSMVYEASARLQDPVFGCVGRIQRLQLQISDLESQISAT 125 ******************************************************************************************999 PP DUF260 98 kee 100 ++ PSME_00031112-RA 126 QAT 128 875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.354 | 28 | 129 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.4E-28 | 32 | 126 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
NLGGIVAAMQ QMMSNDKEKP RTQFPSAAFH DQCKMERKEC LENCTILYRF VSNDLHKFSI 60 LHQVFGACNV IKLIQDLPSD QKIDAVNSMV YEASARLQDP VFGCVGRIQR LQLQISDLES 120 QISATQATIE KIRYLQSIRQ VSNSKANPTI STSLNDDDGE DEDLFDSELT D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-26 | 20 | 134 | 6 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-26 | 20 | 134 | 6 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9SK08 | 1e-31 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A9P1U3 | 1e-55 | A9P1U3_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-33 | LOB domain-containing protein 1 |