PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PSME_00030815-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 410aa MW: 45833.3 Da PI: 6.0172 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.8 | 2.2e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l ++v+ +G g+W++++++ g+ R++k+c++rw +yl PSME_00030815-RA 14 KGLWSPEEDDKLMRYVTIHGVGRWSAVPKHAGLERCGKSCRLRWINYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.8 | 7.6e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++ E++l+vd+++ lG++ W+ Ia +++ gRt++++k++w++ PSME_00030815-RA 67 RGTFSDHEEKLIVDLHATLGNR-WSQIATRLP-GRTDNEIKNFWNS 110 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-26 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.016 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.27E-28 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.6E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.99E-11 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-24 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.881 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.3E-13 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.40E-10 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 410 aa Download sequence Send to blast |
MGRHLCCHKE KLKKGLWSPE EDDKLMRYVT IHGVGRWSAV PKHAGLERCG KSCRLRWINY 60 LRPDLKRGTF SDHEEKLIVD LHATLGNRWS QIATRLPGRT DNEIKNFWNS CIKKKLKQVG 120 IDPNTHKPIS EAVNGSDEQL SLDAQQVSIS LKAEDSFIGA KPMADMMTSE EKCLNPSAIN 180 NHAIPQKEFL DHPNFCAETS SEDSSTNKHP KFLAMNPASY CSNPVLWLLP GSTTSEIDGS 240 QEILIYQGNP SFKAGEIHSA LITPDLKQNS SEYAPYNTMS CSDYSQVVAT NQSIDLSPGT 300 CLSSLFSERS AIQEELSLNG DHIQYCNNGQ FWDSEDREAG KNPCNLTTSQ LDQNKDLNSL 360 EMETTTAVKW SDLLLQQPFD STVKDKVNHG SCPTISWQLQ ESSGFHGSCY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT110301 | 0.0 | BT110301.1 Picea glauca clone GQ03219_I08 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020576892.1 | 2e-79 | transcription factor MYB86-like | ||||
TrEMBL | A0A222UAB9 | 1e-106 | A0A222UAB9_GINBI; R2R3MYB14 | ||||
STRING | XP_006492438.1 | 6e-75 | (Citrus sinensis) | ||||
STRING | XP_006444636.1 | 6e-75 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G09540.1 | 7e-76 | myb domain protein 61 |