PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00030815-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 410aa    MW: 45833.3 Da    PI: 6.0172
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00030815-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.2e-171461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g W++eEd++l ++v+ +G g+W++++++ g+ R++k+c++rw +yl
  PSME_00030815-RA 14 KGLWSPEEDDKLMRYVTIHGVGRWSAVPKHAGLERCGKSCRLRWINYL 61
                      678*******************************************97 PP

2Myb_DNA-binding49.87.6e-1667110146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg ++  E++l+vd+++ lG++ W+ Ia +++ gRt++++k++w++
  PSME_00030815-RA  67 RGTFSDHEEKLIVDLHATLGNR-WSQIATRLP-GRTDNEIKNFWNS 110
                       899*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-26664IPR009057Homeodomain-like
PROSITE profilePS5129426.016965IPR017930Myb domain
SuperFamilySSF466891.27E-2812108IPR009057Homeodomain-like
SMARTSM007174.6E-141363IPR001005SANT/Myb domain
PfamPF002491.3E-151461IPR001005SANT/Myb domain
CDDcd001671.99E-111761No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2465117IPR009057Homeodomain-like
SMARTSM007172.1E-1466114IPR001005SANT/Myb domain
PROSITE profilePS5129418.88166116IPR017930Myb domain
PfamPF002491.3E-1367110IPR001005SANT/Myb domain
CDDcd001674.40E-1069109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MGRHLCCHKE KLKKGLWSPE EDDKLMRYVT IHGVGRWSAV PKHAGLERCG KSCRLRWINY  60
LRPDLKRGTF SDHEEKLIVD LHATLGNRWS QIATRLPGRT DNEIKNFWNS CIKKKLKQVG  120
IDPNTHKPIS EAVNGSDEQL SLDAQQVSIS LKAEDSFIGA KPMADMMTSE EKCLNPSAIN  180
NHAIPQKEFL DHPNFCAETS SEDSSTNKHP KFLAMNPASY CSNPVLWLLP GSTTSEIDGS  240
QEILIYQGNP SFKAGEIHSA LITPDLKQNS SEYAPYNTMS CSDYSQVVAT NQSIDLSPGT  300
CLSSLFSERS AIQEELSLNG DHIQYCNNGQ FWDSEDREAG KNPCNLTTSQ LDQNKDLNSL  360
EMETTTAVKW SDLLLQQPFD STVKDKVNHG SCPTISWQLQ ESSGFHGSCY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28121165108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1103010.0BT110301.1 Picea glauca clone GQ03219_I08 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020576892.12e-79transcription factor MYB86-like
TrEMBLA0A222UAB91e-106A0A222UAB9_GINBI; R2R3MYB14
STRINGXP_006492438.16e-75(Citrus sinensis)
STRINGXP_006444636.16e-75(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.17e-76myb domain protein 61