PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00030811-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 226aa MW: 25708.1 Da PI: 7.3408 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 61.1 | 3.6e-19 | 9 | 61 | 54 | 107 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLv 107 ++ ewyfFs++dkky++g+r+nratk+gyWkatgkd+++ s k++ +g+kktL PSME_00030811-RA 9 RDLEWYFFSPHDKKYPNGTRTNRATKAGYWKATGKDRKINS-KSSMIGTKKTLD 61 4569*************************************.8999******95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 17.706 | 1 | 116 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.27E-19 | 8 | 71 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.7E-7 | 13 | 61 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MDKSFFPNRD LEWYFFSPHD KKYPNGTRTN RATKAGYWKA TGKDRKINSK SSMIGTKKTL 60 DAFVLCRVCK KNGIEPRVGC CNEPPIKKSA LPSEMNNSFS DKMNKIDKGY TQVKQEEADT 120 QENPTLKLET SSETLNDRTN NGAPLNQWLQ FLLDEPNPTY ILTSPANARH DLTVSFMLGG 180 ARLEQESLWP MFKIDNFSEG LADLSFNQIT SQIEPMLSHT MDACFE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-15 | 1 | 64 | 57 | 124 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-15 | 1 | 64 | 57 | 124 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-15 | 1 | 64 | 57 | 124 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-15 | 1 | 64 | 57 | 124 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-15 | 1 | 64 | 60 | 127 | NAC domain-containing protein 19 |
3swm_B | 1e-15 | 1 | 64 | 60 | 127 | NAC domain-containing protein 19 |
3swm_C | 1e-15 | 1 | 64 | 60 | 127 | NAC domain-containing protein 19 |
3swm_D | 1e-15 | 1 | 64 | 60 | 127 | NAC domain-containing protein 19 |
3swp_A | 1e-15 | 1 | 64 | 60 | 127 | NAC domain-containing protein 19 |
3swp_B | 1e-15 | 1 | 64 | 60 | 127 | NAC domain-containing protein 19 |
3swp_C | 1e-15 | 1 | 64 | 60 | 127 | NAC domain-containing protein 19 |
3swp_D | 1e-15 | 1 | 64 | 60 | 127 | NAC domain-containing protein 19 |
4dul_A | 1e-15 | 1 | 64 | 57 | 124 | NAC domain-containing protein 19 |
4dul_B | 1e-15 | 1 | 64 | 57 | 124 | NAC domain-containing protein 19 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 4e-28 | NAC domain containing protein 28 |