PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00030678-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 245aa MW: 28121.7 Da PI: 8.443

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00030678-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.7	3.1e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrF Ptdeelv +yLk kv+g k+el evi+evdiyk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nrat++gyWkatgkd+e PSME_00030678-RA 6 LPPGFRFYPTDEELVAYYLKGKVHGWKIEL-EVIPEVDIYKCEPWDLPdKsLLPERDLEWYFFSPRDRKYPKGSRTNRATEAGYWKATGKDRE 97 79**************************.99***********5434445666******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v s + ++vg+kktLvfy grap+g++t+Wvmheyrl PSME_00030678-RA 98 VSS-RMSTVGMKKTLVFYGGRAPHGSRTNWVMHEYRL 133 9.8999***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.19E-62	3	156	IPR003441	NAC domain
PROSITE profile	PS51005	59.747	6	156	IPR003441	NAC domain
Pfam	PF02365	2.3E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MAQTSLPPGF RFYPTDEELV AYYLKGKVHG WKIELEVIPE VDIYKCEPWD LPDKSLLPER 60 DLEWYFFSPR DRKYPKGSRT NRATEAGYWK ATGKDREVSS RMSTVGMKKT LVFYGGRAPH 120 GSRTNWVMHE YRLHEMEFEG SASFPDAYAL CRVFKKMKPG PRIGNQCGAP VENAFSGCVL 180 NLFNQNMISS VEQSKERPSP LSQEQKDQPN SRECSSQIIK DRNVDDGFPS HNGSKNHSKV 240 SETFY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-60	1	156	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-60	1	156	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-60	1	156	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-60	1	156	12	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-60	1	156	15	168	NAC domain-containing protein 19
3swm_B	2e-60	1	156	15	168	NAC domain-containing protein 19
3swm_C	2e-60	1	156	15	168	NAC domain-containing protein 19
3swm_D	2e-60	1	156	15	168	NAC domain-containing protein 19
3swp_A	2e-60	1	156	15	168	NAC domain-containing protein 19
3swp_B	2e-60	1	156	15	168	NAC domain-containing protein 19
3swp_C	2e-60	1	156	15	168	NAC domain-containing protein 19
3swp_D	2e-60	1	156	15	168	NAC domain-containing protein 19
4dul_A	2e-60	1	156	12	165	NAC domain-containing protein 19
4dul_B	2e-60	1	156	12	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020581712.1	1e-92	NAC domain-containing protein 86-like isoform X3
Swissprot	A4VCM0	1e-80	NAC45_ARATH; NAC domain-containing protein 45
TrEMBL	A0A1U8ARY4	3e-89	A0A1U8ARY4_NELNU; NAC domain-containing protein 45
TrEMBL	A0A2I0AC21	1e-89	A0A2I0AC21_9ASPA; NAC domain-containing protein 78
TrEMBL	A0A3Q0IGZ0	9e-91	A0A3Q0IGZ0_PHODC; NAC domain-containing protein 45-like
STRING	XP_008813657.1	1e-91	(Phoenix dactylifera)
STRING	XP_010270697.1	5e-90	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	3e-85	NAC domain containing protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]