PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00030461-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 126aa MW: 14074.9 Da PI: 7.4179 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 42.6 | 2.2e-13 | 1 | 93 | 29 | 117 |
GAGA_bind 29 mssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla.salpvgvqvlsgtksidslqqlse...p 117 ms++aerda+i ern+a+s+kkaa+ae++ a+ qrd a a+rn a++++d ++++l +++++ + +++++ls++k ++ l + ++ + PSME_00030461-RA 1 MSIVAERDAAIVERNTAFSKKKAAFAEKETALFQRDVAYADRNTAILDHDAAAATLDYARDGGWnCQRRFSCGTLSNAKILQVLAENTNffaR 93 9********************************************************999887646778999*****9999988885554442 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MSIVAERDAA IVERNTAFSK KKAAFAEKET ALFQRDVAYA DRNTAILDHD AAAATLDYAR 60 DGGWNCQRRF SCGTLSNAKI LQVLAENTNF FAREFQSMQP INVAFFSPVL VTPLFEEPQK 120 TVKHIS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF677529 | 1e-120 | EF677529.1 Picea sitchensis clone WS02770_D01 unknown mRNA. | |||
GenBank | FJ982281 | 1e-120 | FJ982281.1 Picea sitchensis GAGA-binding transcriptional activator (BBR/BPC1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LNW9 | 2e-62 | B8LNW9_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42520.1 | 1e-09 | basic pentacysteine 6 |