PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00030429-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | HB-other | ||||||||
Protein Properties | Length: 184aa MW: 20554.3 Da PI: 10.8017 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 19.6 | 1.5e-06 | 41 | 82 | 25 | 56 |
--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS Homeobox 25 psaeereeLAkkl..........gLterqVkvWFqNrRakek 56 p ++ ++ LA+k ++++qV +WFqN+R+ +k PSME_00030429-RA 41 PHRDVIRSLAEKFsasperdgkiLVQTKQVWTWFQNKRYSQK 82 666777777777777777777668999************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.56E-8 | 26 | 85 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.8E-5 | 26 | 89 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
LSGLNGTSKL EMAGSVLNRP YLLEPVQEME KVLENVKGAI PHRDVIRSLA EKFSASPERD 60 GKILVQTKQV WTWFQNKRYS QKSKSIKVQG NTAPSPRDDS LPKRTVTSSA AVPSGRKNPD 120 AAEMEFEAKS ARDGAWSVQE QGEEKKGKRK EERKKDVKGL EKKRRGGQSQ RRKDRTLGGE 180 KGGH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 147 | 164 | KRKEERKKDVKGLEKKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF677346 | 1e-133 | EF677346.1 Picea sitchensis clone WS02766_B05 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010275167.1 | 3e-38 | PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 | ||||
Refseq | XP_010275168.1 | 3e-38 | PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 | ||||
Swissprot | Q8RWJ7 | 3e-24 | SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
TrEMBL | B8LNE3 | 2e-61 | B8LNE3_PICSI; Uncharacterized protein | ||||
STRING | XP_010275166.1 | 1e-37 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.3 | 6e-27 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |