PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00030259-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 339aa    MW: 38600.4 Da    PI: 8.1102
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00030259-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.51.1e-52131401128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrF Ptdeelvv+yL+kkv +++l++  +i evd+yk++Pw+Lp+k+  +ekewyfF++rd+ky++g+r+nra+ sgyWkatg dk+++
  PSME_00030259-RA  13 LPPGFRFFPTDEELVVHYLCKKVVSHPLPA-FIIGEVDLYKYDPWQLPEKALFGEKEWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPIT 104
                       79***************************9.67***************8888899*************************************9 PP

               NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +  +++ vg+kk Lvfykg+apkg+kt+W+mheyr+
  PSME_00030259-RA 105 TCgGKKRVGVKKALVFYKGKAPKGSKTNWIMHEYRM 140
                       9866777***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-639166IPR003441NAC domain
PROSITE profilePS5100561.04313166IPR003441NAC domain
PfamPF023659.1E-2714140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MTEKGGSGGQ IDLPPGFRFF PTDEELVVHY LCKKVVSHPL PAFIIGEVDL YKYDPWQLPE  60
KALFGEKEWY FFTPRDRKYP NGSRPNRAAG SGYWKATGAD KPITTCGGKK RVGVKKALVF  120
YKGKAPKGSK TNWIMHEYRM AEINLAARKK NTLRLDDWVL CRIYNKKSSA EKLEEKKLAE  180
EMESRQEMEE AIEQQHKSRP LDPSHTDAST VSAEGGLAST DSSILVSQLP GAMNLSSDHH  240
QNPFYQHHST DEVQQINMKL ANQFIQKQQQ HHSTDEVQVN MKLANQLIQK QQQSGQSLNF  300
NLGLDGVQNP FFHLDHSESS SLFSPYPEYI DSYSIQRSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-821017214171NO APICAL MERISTEM PROTEIN
1ut4_B2e-821017214171NO APICAL MERISTEM PROTEIN
1ut7_A2e-821017214171NO APICAL MERISTEM PROTEIN
1ut7_B2e-821017214171NO APICAL MERISTEM PROTEIN
4dul_A2e-821017214171NAC domain-containing protein 19
4dul_B2e-821017214171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020254522.11e-93LOW QUALITY PROTEIN: NAC domain-containing protein 68-like
TrEMBLA0A0C9RGR21e-105A0A0C9RGR2_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_25871_1634 transcribed RNA sequence
STRINGXP_008782755.15e-92(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.11e-87NAC domain containing protein 32