PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00030087-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C2H2
Protein Properties Length: 846aa    MW: 94829.2 Da    PI: 7.3449
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00030087-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.000674163223
                      EETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                      +C +C+++F++   +k H+++ H
  PSME_00030087-RA 41 QCMYCDRTFKQDGRYKEHLKNkH 63
                      7*******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1050.106.8E-4870IPR026939At2g23090-like
SMARTSM003550.00794063IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8894068IPR007087Zinc finger, C2H2
PROSITE patternPS0002804263IPR007087Zinc finger, C2H2
SuperFamilySSF547688.77E-10101177No hitNo description
Gene3DG3DSA:3.30.160.207.1E-6105139IPR014720Double-stranded RNA-binding domain
CDDcd000485.64E-7106174No hitNo description
SMARTSM003581.1E-4107178IPR014720Double-stranded RNA-binding domain
SMARTSM001655.9342378IPR015940Ubiquitin-associated domain
PROSITE profilePS5003010.86413453IPR015940Ubiquitin-associated domain
SuperFamilySSF469341.36E-5414453IPR009060UBA-like
SMARTSM001654.9E-5415452IPR015940Ubiquitin-associated domain
SuperFamilySSF544958.65E-10471577IPR016135Ubiquitin-conjugating enzyme/RWD-like
Gene3DG3DSA:3.10.110.108.9E-10472581IPR016135Ubiquitin-conjugating enzyme/RWD-like
PfamPF057732.7E-10476575IPR006575RWD domain
SMARTSM005917.4E-4480580IPR006575RWD domain
PROSITE profilePS5090814.809480580IPR006575RWD domain
SuperFamilySSF525401.82E-27696840IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM004871.4E-7698846IPR014001Helicase superfamily 1/2, ATP-binding domain
Gene3DG3DSA:3.40.50.3002.7E-38699842IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS5119213.892710838IPR014001Helicase superfamily 1/2, ATP-binding domain
CDDcd000465.81E-19717846No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    Send to blast
MNSKLKSKQQ ASSRHVYKSG AAGCGGKAST VNPKNSGQVI QCMYCDRTFK QDGRYKEHLK  60
NKHANEDLEQ AQLINLHGTS SALESVGDVA LVSTQGPSQS SYPVKTPKSL LHEWCQKNKK  120
PAPKFKHVEV VGGFHCRVVL PDPKKSEADV ILWYTEKAVP TAQEAQHHAS VMALYYVMGD  180
RRLDRILPYE YREQWLELER AAEIKKSFAK VNYPKPISRT LPSREIQSVF MSESNRQLVE  240
GLLLDKNDNI AKDESVAFTS VNGFPLQGMK CGNEVVEIHE KEGSLHNNDI GVIDNNGSRL  300
KCSLKDNVEL EKGCCPNQPL GHGALKFKNK GLVEKTSNTH TEDKTRSELI GMGFKEHYVS  360
AALTKSNQLS ICLDWLMLHV PENQLPFKFA PRASKASVQV LVNKNEETAK NFLLENQRIA  420
RLLEYGYDHH RCKLALSEAN GDEDIALHRL FMQATERNSS DNTSNKLDKC TNELHELRSE  480
ELVALQSIFG EEAISLSLSF FKFNIKLMET SSIPLEMEVK VLPGTLYPFE IPIVAFRSPN  540
LASKFLLELT RNIYKRAVEL VGTQMIYELF CSATDEANSL IMKYSVEVQS SEEIMTEIVA  600
PACSKEGAVE MFSTNTCIDS FMPLEMSSTS AVTSSYRPPA LRHKHSDGKL SRHAETISVS  660
ESIHSAQEDY HNISLRMKKE WDYIQSSPAH SEMCATRQKL PAFKKKEDVV DAVKNSSVTV  720
ICGQTGCGKS TQVPQYLLED YIDRGLGSLC NIICTQPRRV SAIGLADRVA RERGEMAGET  780
VGYSVRLESC QSSRTKILFC TTGILLRRML SDPDLKDVTH VIVDEVHERT LEGDLLLLLV  840
QEHLKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5vhe_A8e-42690844113270DEAH (Asp-Glu-Ala-His) box polypeptide 36
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6778370.0EF677837.1 Picea sitchensis clone WS02775_N24 unknown mRNA.