PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00030049-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family RAV
Protein Properties Length: 1084aa    MW: 121325 Da    PI: 8.4823
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00030049-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.52.8e-1298146155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+ykGV   + +grW A+I++      + r++lg+f  +e+Aa+a+++a+ k++g
  PSME_00030049-RA  98 SKYKGVVPQP-NGRWGAQIYEK-----HHRVWLGTFNREEDAARAYDRAAIKFRG 146
                       89****9888.8*********3.....5************************998 PP
2B3993e-31218325199
                       EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                       f+k+ tpsdv+k++rlv+pk++ae+h         gg+k +++ l+++d ++ + W+++++y+++s++yvltkGW++Fvk+++L++gD+v+F+
  PSME_00030049-RA 218 FDKAVTPSDVGKLNRLVIPKQHAEKHfpldvelasGGEKGKGVLLSFYDnSTEKIWRFRYSYWNSSQSYVLTKGWSRFVKEKRLQAGDIVTFQ 310
                       89*********************************9999**********5555**************************************** PP

                       E-SSSEE..EEEEE-S CS
                B3  84 ldgrsefelvvkvfrk 99 
                       +++ ++++l+++++r+
  PSME_00030049-RA 311 RSS-RSRHLFITFRRR 325
                       776.666688888887 PP
3B3993e-31829936199
                       EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                       f+k+ tpsdv+k++rlv+pk++ae+h         gg+k +++ l+++d ++ + W+++++y+++s++yvltkGW++Fvk+++L++gD+v+F+
  PSME_00030049-RA 829 FDKAVTPSDVGKLNRLVIPKQHAEKHfpldvelasGGEKGKGVLLSFYDnSTEKIWRFRYSYWNSSQSYVLTKGWSRFVKEKRLQAGDIVTFQ 921
                       89*********************************9999**********5555**************************************** PP

                       E-SSSEE..EEEEE-S CS
                B3  84 ldgrsefelvvkvfrk 99 
                       +++ ++++l+++++r+
  PSME_00030049-RA 922 RSS-RSRHLFITFRRR 936
                       776.666688888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.53E-1798154IPR016177DNA-binding domain
PfamPF008471.4E-798146IPR001471AP2/ERF domain
CDDcd000181.13E-1498153No hitNo description
PROSITE profilePS5103220.03399154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-2199154IPR001471AP2/ERF domain
SMARTSM003801.3E-2899160IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.0E-38210327IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-29213328IPR015300DNA-binding pseudobarrel domain
CDDcd100171.33E-25216324No hitNo description
SMARTSM010199.7E-25218326IPR003340B3 DNA binding domain
PfamPF023621.1E-27218325IPR003340B3 DNA binding domain
PROSITE profilePS5086314.156218326IPR003340B3 DNA binding domain
PROSITE profilePS512149.61315377IPR002652Importin-alpha, importin-beta-binding domain
PfamPF017491.5E-8333397IPR002652Importin-alpha, importin-beta-binding domain
Gene3DG3DSA:1.25.10.104.8E-83340757IPR011989Armadillo-like helical
SuperFamilySSF483716.99E-78340758IPR016024Armadillo-type fold
SMARTSM001853.6E-4399440IPR000225Armadillo
CDDcd000201.15E-24405525No hitNo description
PfamPF005143.1E-9442481IPR000225Armadillo
SMARTSM001851.9E-8442482IPR000225Armadillo
PROSITE profilePS5017610.657453495IPR000225Armadillo
SMARTSM0018577484525IPR000225Armadillo
SMARTSM001859.2527566IPR000225Armadillo
CDDcd000209.25E-18537642No hitNo description
SMARTSM001857.8600642IPR000225Armadillo
CDDcd000208.28E-13605706No hitNo description
SMARTSM001859.4E-5644684IPR000225Armadillo
PfamPF005141.3E-7645681IPR000225Armadillo
PfamPF161861.2E-12720764IPR032413Atypical Arm repeat
Gene3DG3DSA:2.40.330.104.1E-38822938IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-29824939IPR015300DNA-binding pseudobarrel domain
CDDcd100171.33E-25827935No hitNo description
PROSITE profilePS5086314.156829937IPR003340B3 DNA binding domain
SMARTSM010199.7E-25829937IPR003340B3 DNA binding domain
PfamPF023621.1E-27829936IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006606Biological Processprotein import into nucleus
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008565Molecular Functionprotein transporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 1084 aa     Download sequence    Send to blast
NILAVPMAAP YNLLKVMAAN STRTNSEDQA GTVIIEDRDS NTSPVAAGKS AVSSPFADRT  60
RLERMGSGTS STVSSENTRT PPRSGGDQEN SCKKLPSSKY KGVVPQPNGR WGAQIYEKHH  120
RVWLGTFNRE EDAARAYDRA AIKFRGSDAI TNFNFAESHP EAFFLRGHSK GEIVDMLKKH  180
TYDEELNQNS NSNLNKFSSG RNPEVAGSKP PEPREHLFDK AVTPSDVGKL NRLVIPKQHA  240
EKHFPLDVEL ASGGEKGKGV LLSFYDNSTE KIWRFRYSYW NSSQSYVLTK GWSRFVKEKR  300
LQAGDIVTFQ RSSRSRHLFI TFRRRPCNLL PPQRYKVAVD SVEAHSKREE NMVEIQKSKR  360
EETLLEKRRE ALNSQPSSGY DQRISLDEKL QSLPAVVVAN PSINDVVESG VVPLLVDILR  420
RADMPQLQFE AAWDLTIIVS GNTEHTKLVI YCGALPLFVE LLTSVDDDLQ EHVVWALGNI  480
AGDSTEYRHM VLAHGALWHV LAQFQKNVTI SMIRTVAWTL SNFYSGKPQP QFHQVKYALP  540
TLEWLLHIEE EEVLASACWA LSYIYDGPNE NIQGIIDAGI CPKHSSPFVV TPALKAVGNL  600
VTGDDVVIDN KVLPRLLDLL TNKRTKKTII GHICWIISNV TAETTEQLQA VINANIFPPL  660
LSLLANAEFN IKRDVAWAVS NAIASASEEQ IKTITVCLHG LEKILRADET EKNEGISKVN  720
VYVSIIEDAG GFDNIEALQI HENTQVYREA VKILNNGFVE EDDDHVLTIH PEAFFLRGHS  780
KGEIVDMLKK HTYDEELNQN SNSNLNKFSS GRNPEVAGSK PQEPREHLFD KAVTPSDVGK  840
LNRLVIPKQH AEKHFPLDVE LASGGEKGKG VLLSFYDNST EKIWRFRYSY WNSSQSYVLT  900
KGWSRFVKEK RLQAGDIVTF QRSSRSRHLF ITFRRRPCSL LPLVAPLQLH KRFPQSLNRY  960
AVTRYSHWAQ LFYAPAAAAC IQPIAHCSIP CVANPNSIYS LSTPKSVSDQ GNTSALDFVD  1020
LQETPAPSTT GNSCSSSVRL FGVNLQPSPL NLFPVESLAV PTYKRKPAEA MFTGGKRRYN  1080
GQGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4b8j_A1e-14433476417501IMPORTIN SUBUNIT ALPHA-1A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.25e-84related to ABI3/VP1 2