PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00030013-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 497aa    MW: 56399.1 Da    PI: 8.738
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00030013-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.41.5e-28196253259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYG+K  k+s++pr+YYrC+ ++C vkk ver+a+d+ +v++tY g+Hnhe
  PSME_00030013-RA 196 QDGYKWRKYGRKFLKNSPNPRNYYRCSDSNCDVKKTVERDAHDKGIVITTYLGNHNHE 253
                       8********************************************************8 PP
2WRKY86.91.8e-27405462259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       + gy+WrKYG+K  k+s++prsYYrC+ ++C vkk ver+a+d+ +v++tY g+Hnhe
  PSME_00030013-RA 405 QEGYKWRKYGRKFLKKSPNPRSYYRCSDSNCDVKKTVERDAHDKGIVITTYLGTHNHE 462
                       689******************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-30184255IPR003657WRKY domain
SuperFamilySSF1182904.71E-26187255IPR003657WRKY domain
PROSITE profilePS5081129.379190255IPR003657WRKY domain
SMARTSM007743.4E-30195254IPR003657WRKY domain
PfamPF031062.2E-22196253IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.7E-29392464IPR003657WRKY domain
SuperFamilySSF1182906.02E-25396464IPR003657WRKY domain
PROSITE profilePS5081128.208399464IPR003657WRKY domain
SMARTSM007748.9E-27404463IPR003657WRKY domain
PfamPF031061.0E-21406462IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MKKAGRYFPN SYFFLKLTLS WVVSQARPIL FCQPIGLHGG IRHVPVFQIS SKDLVSFWET  60
VEVFAMANFD PIIHNFQDAI KGFSKGQTQP LQEANCSQNK KGAEAFEISD FLVSEEGADD  120
QSCNFKTGTS GPSIQRDYAR SFPTNPPCIH LNHNSNVIQA HESPETINPQ EGSRKRKAER  180
GLKYAFVTRS ETDILQDGYK WRKYGRKFLK NSPNPRNYYR CSDSNCDVKK TVERDAHDKG  240
IVITTYLGNH NHESPTVIYY IGRPEMHQAA SASTPNYQLG NGDAIKGFSK EETQPLQEAN  300
CSQHMKGAEA FEISDFLNVL EEDAGDQSFN FKTGTSGPSV QRDYARAFPS SAPCIQGIHL  360
DHNSTVIQTQ KPFETINPKE GSRKRKAERT LKYAFVTRSE TEIMQEGYKW RKYGRKFLKK  420
SPNPRSYYRC SDSNCDVKKT VERDAHDKGI VITTYLGTHN HESPTVIYYI ERPEMHQASA  480
STPNFQLGMN GNFFHSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-21188464774WRKY transcription factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2697742e-33EU269774.1 Pinus monticola WRKY transcription factor PmWRKY126 mRNA, partial cds.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.21e-36zinc-dependent activator protein-1