PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00029922-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 452aa    MW: 50109.2 Da    PI: 7.7568
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00029922-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.48e-141057148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT +Ed++l +++k +G   W + +++ g+ R++k+c++rw++yl
  PSME_00029922-RA 10 RGPWTRDEDLRLTNYIKAHGEAGWVALPAKAGLLRCGKSCRLRWLNYL 57
                      89******************************99************97 PP
2Myb_DNA-binding44.82.8e-1468107647
                       HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++E++l+++++++lG++ W++Ia +++ gRt++++k++w++ 
  PSME_00029922-RA  68 PDEEDLIIRLHRLLGNR-WALIAGRIP-GRTDNEIKNYWNTN 107
                       89***************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500909.953857IPR017877Myb-like domain
SuperFamilySSF466894.59E-258104IPR009057Homeodomain-like
SMARTSM007179.7E-10959IPR001005SANT/Myb domain
PfamPF002491.0E-111057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-181164IPR009057Homeodomain-like
CDDcd001673.42E-71257No hitNo description
PROSITE profilePS5129423.92758112IPR017930Myb domain
SMARTSM007171.1E-1362110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2265113IPR009057Homeodomain-like
PfamPF002493.1E-1368108IPR001005SANT/Myb domain
CDDcd001673.97E-1168108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MGRTPLALNR GPWTRDEDLR LTNYIKAHGE AGWVALPAKA GLLRCGKSCR LRWLNYLRPD  60
VKRGHILPDE EDLIIRLHRL LGNRWALIAG RIPGRTDNEI KNYWNTNLSK KLISQGINPR  120
THKHFSESQD KGSNPGEREA SQKSLAESRA DHLQAMPSKA GGAIAGHVNQ DDRASTAWPP  180
LNNQFPQASL AYNPTPRASL AIHFLSRYSV IYSMTNAFQE YTNYLLCFPG ILSHSTNTNN  240
IGSKQSYFDP LTPCKSFRSS ARDGVGRYDL DQNLLKNPVT SSNDMIASTV RLSSGLITAP  300
FATQFKSSHA FLSGNALLNG KHAEMSSLQS LQDFETNPHS SFIVNPYEEA DCHQLSHTSC  360
DASQQNAAAC SCQYPIIPTV MGTALGDFNS DIFPSLLKSF GNEELMQLEE GYSADTSIAQ  420
NVQACLLKED KAENLNSYDL LAKLCPWSQY QP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-2681125108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LNN41e-118B8LNN4_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-60myb domain protein 5