PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00029813-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 748aa MW: 84378.1 Da PI: 5.3174

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00029813-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179	1.3e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeelv +yLk+kv+g k+el e+i++vdiyk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nrat++gyWkatgkd++ PSME_00029813-RA 6 LPPGFRFHPTDEELVAYYLKRKVNGWKIEL-EIIPDVDIYKCEPWDLPeKsFLPGKDLEWYFFSPRDRKYPNGSRTNRATEAGYWKATGKDRK 97 79**************************.99**********95334444667******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v s + + +g+kktLvfy+grap+g++tdWvmheyrl PSME_00029813-RA 98 VSS-HMHPIGMKKTLVFYTGRAPHGSRTDWVMHEYRL 133 9.999****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.66E-64	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	61.295	6	156	IPR003441	NAC domain
Pfam	PF02365	1.4E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 748 aa Download sequence Send to blast
MAPMALPPGF RFHPTDEELV AYYLKRKVNG WKIELEIIPD VDIYKCEPWD LPEKSFLPGK 60 DLEWYFFSPR DRKYPNGSRT NRATEAGYWK ATGKDRKVSS HMHPIGMKKT LVFYTGRAPH 120 GSRTDWVMHE YRLDEKECEA SATLQEAYAL CRVFKKSGPG PRIGEQYGAP VENDFSRDMV 180 NSHNQNKLLL LEEQSEEKPS PLSQKEEEDQ INSRETSSEI INDRFLDAEA PKRWLQSMPY 240 DTAKCNSPSL NQSLSYPKVE LNESSCPPLG VEDFRNCLNF SDSKGLSAYL LDEQPDSYAQ 300 EAQMLEQLFR DAQTSQQNNY VDQFINSNVA DMLNDEDERH LDKCNKENEH RKANSSEGSE 360 EEGGHFPMNS FFAQDYNSED FYDRPEELFF NRFVRQNSNP ETIKQLEDSL PAALSRGLSS 420 AVHGRKFQFN TGLVQNDYWN TGFSDMNIAM PGNKRQPYNL PDGSGGLTHE HYADYFPTDS 480 FQLYETFDHG CHGLTSTPAK SSRYGLFLNE LPSEVLEISD NLQDTEYIEQ SSHVSSKTSS 540 VEKNYEKNPQ EPKIRKIPSG KMLCKASVKQ GLTTLNGSIE NPKFNNALAK EEGLESSRGE 600 SKMGKFFSSC KAKVVGYLAS LNSYKSTLAS GITSCRAIRT TTVSARVMPL AVGHTFSIQD 660 HGEVLNVSSC GLRHRDLKGG AHNVSNNVLV DGDGDKSVDQ MAEKLCDSGL FQRGSERSFA 720 TLNGYSFVLI CSLLGMLVLV MFFMLNAC

Sequence ? help Back to Top

Protein Sequence Length: 748 aa Download sequence Send to blast

MAPMALPPGF RFHPTDEELV AYYLKRKVNG WKIELEIIPD VDIYKCEPWD LPEKSFLPGK  60
DLEWYFFSPR DRKYPNGSRT NRATEAGYWK ATGKDRKVSS HMHPIGMKKT LVFYTGRAPH  120
GSRTDWVMHE YRLDEKECEA SATLQEAYAL CRVFKKSGPG PRIGEQYGAP VENDFSRDMV  180
NSHNQNKLLL LEEQSEEKPS PLSQKEEEDQ INSRETSSEI INDRFLDAEA PKRWLQSMPY  240
DTAKCNSPSL NQSLSYPKVE LNESSCPPLG VEDFRNCLNF SDSKGLSAYL LDEQPDSYAQ  300
EAQMLEQLFR DAQTSQQNNY VDQFINSNVA DMLNDEDERH LDKCNKENEH RKANSSEGSE  360
EEGGHFPMNS FFAQDYNSED FYDRPEELFF NRFVRQNSNP ETIKQLEDSL PAALSRGLSS  420
AVHGRKFQFN TGLVQNDYWN TGFSDMNIAM PGNKRQPYNL PDGSGGLTHE HYADYFPTDS  480
FQLYETFDHG CHGLTSTPAK SSRYGLFLNE LPSEVLEISD NLQDTEYIEQ SSHVSSKTSS  540
VEKNYEKNPQ EPKIRKIPSG KMLCKASVKQ GLTTLNGSIE NPKFNNALAK EEGLESSRGE  600
SKMGKFFSSC KAKVVGYLAS LNSYKSTLAS GITSCRAIRT TTVSARVMPL AVGHTFSIQD  660
HGEVLNVSSC GLRHRDLKGG AHNVSNNVLV DGDGDKSVDQ MAEKLCDSGL FQRGSERSFA  720
TLNGYSFVLI CSLLGMLVLV MFFMLNAC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-55	1	156	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-55	1	156	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-55	1	156	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-55	1	156	12	165	NO APICAL MERISTEM PROTEIN
3swm_A	8e-55	1	156	15	168	NAC domain-containing protein 19
3swm_B	8e-55	1	156	15	168	NAC domain-containing protein 19
3swm_C	8e-55	1	156	15	168	NAC domain-containing protein 19
3swm_D	8e-55	1	156	15	168	NAC domain-containing protein 19
3swp_A	8e-55	1	156	15	168	NAC domain-containing protein 19
3swp_B	8e-55	1	156	15	168	NAC domain-containing protein 19
3swp_C	8e-55	1	156	15	168	NAC domain-containing protein 19
3swp_D	8e-55	1	156	15	168	NAC domain-containing protein 19
4dul_A	8e-55	1	156	12	165	NAC domain-containing protein 19
4dul_B	8e-55	1	156	12	165	NAC domain-containing protein 19

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	8e-92	NAC domain containing protein 28