PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00029717-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family G2-like
Protein Properties Length: 504aa    MW: 56377 Da    PI: 5.2289
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00029717-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.71.5e-24275327356
           G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                        ++Wt +LH rFv+aveqL G ++A+P+ ilelmkv+gLt+++v+SHL kYR++
  PSME_00029717-RA 275 NVEWTMDLHWRFVQAVEQL-GVDQAIPSIILELMKVDGLTRHNVASHLHKYRSH 327
                       579****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.006270329IPR017930Myb domain
SuperFamilySSF466897.17E-14273330IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-22274330IPR009057Homeodomain-like
TIGRFAMsTIGR015574.8E-21275327IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
ITREFFHHFL VMGLWWVSLV HNSVGGGMLE SHCIAFLEDF PKGFRVLVLD EDIEAAAKTK  60
SRLEVSTFSN KTEALDVVSN ETNSFHVALV KEFPEHDDEV HITQSSEVLT ETNIRGQAQK  120
YLAMCGSQGP KLANVKSAQN GDSSNGSKTE ASALHEVHSC TPIPIDSIKQ DTSIEPCNSE  180
KFPAPSTPQL EQGGRSPSEE DKTLRLDDTT NFKAGTTHAD NNCDLHSRFE TIDVQVVSGP  240
GIEEEEVGFA EGSKGDNENI EKEAILSSSA CNEENVEWTM DLHWRFVQAV EQLGVDQAIP  300
SIILELMKVD GLTRHNVASH LHKYRSHRRH IFPREDEVAS RRYWHHFDPA WTRTKQDEAG  360
FVKGILLLDQ FLDIHQVNYI LHHMGLVCLD SWGFPTLGMP FYPQPMTKLP TNHGHRSTPN  420
PNSTIQGVSV QHNPISDPLN NNGSPLWEKS FNRYPPKEVI DESFKEALNN PWTPLPLGLK  480
TPSMESVMEE LQSQGISKIP PPAS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1078841e-119BT107884.1 Picea glauca clone GQ03113_O04 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-37ARR-B family protein