PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00029610-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | B3 | ||||||||
Protein Properties | Length: 165aa MW: 19208.9 Da PI: 4.9807 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.8 | 1.2e-10 | 89 | 156 | 15 | 83 |
-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 15 rlvlpkkfaeeh.ggkkeesktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFk 83 +++p f++++ +g++ +t++d +g sW+++ y k++ r v+t+GW+eF+++++ k gD+++ + PSME_00029610-RA 89 EVSFPLMFMTKYlSGSQ---GIVTFKDCDGFSWRIEWyAYPKSRLRLVFTTGWSEFASDHNEKYGDILLVE 156 5689999**99974442...36**************9455888888********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.827 | 75 | 165 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-9 | 89 | 156 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.0E-11 | 89 | 158 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.9E-11 | 90 | 163 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.29E-11 | 91 | 156 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
ISFYNGSNGN MESNMEIREQ VIWTGESWLF LDNETSMMGT KGSFNNRYKP HVGEGLLIPN 60 REMVTDFVKD ILLNILHLQG QSRENALVEV SFPLMFMTKY LSGSQGIVTF KDCDGFSWRI 120 EWYAYPKSRL RLVFTTGWSE FASDHNEKYG DILLVEILNL YYFKV |