PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00029565-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ARR-B
Protein Properties Length: 708aa    MW: 77459.3 Da    PI: 5.6367
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00029565-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.31.7e-28233286155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       kpr +W+ eLH++Fv+av+ L G++kA+Pk+ilelm+v+gLt e+v+SHLQkYRl
  PSME_00029565-RA 233 KPRFVWSVELHQQFVNAVNTL-GIDKAVPKQILELMNVQGLTQENVASHLQKYRL 286
                       79*******************.********************************8 PP
2Response_reg30.51.9e-1159123164
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellke 64 
                       vl+v D+p+ + ll+++l + +y +++++ +    l ll+e++  +Dl++ D+ mp+mdG++ll+ 
  PSME_00029565-RA  59 VLVVYDDPICLLLLENLLHRCQY-NITSCGQVITSLSLLRENRdkFDLVISDVYMPDMDGFKLLEL 123
                       89*********************.***************888889*****************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363925.0E-12835706IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23008.6E-2256180No hitNo description
SuperFamilySSF521721.99E-2156170IPR011006CheY-like superfamily
SMARTSM004483.9E-1057156IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011015.75558160IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.9E-859123IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.68E-581159No hitNo description
Gene3DG3DSA:1.10.10.601.2E-29230291IPR009057Homeodomain-like
PROSITE profilePS512949.786230289IPR017930Myb domain
SuperFamilySSF466895.2E-19230290IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-24233286IPR006447Myb domain, plants
PfamPF002493.2E-6237285IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MEMGRSEGGL AVVATQQSPH TNTSVLPRNL NMKDLKSNDR VKVMNDEEAN DDFPIGMHVL  60
VVYDDPICLL LLENLLHRCQ YNITSCGQVI TSLSLLRENR DKFDLVISDV YMPDMDGFKL  120
LELVGLELEF LLSGITHGAC DYLLNPVRLE ELKNIWQHLV RKKRTERKDR DNLDHGDGND  180
KFNHRAEDGE NGSSANDGTN CSWKMNRKRK AQNEDEDGDE DEHDIEDPST SKKPRFVWSV  240
ELHQQFVNAV NTLGIDKAVP KQILELMNVQ GLTQENVASH LQKYRLYLKR LSGVASQQGS  300
MGNAFGGGRE SSFGSLCQVD GIGDLQVLAQ SGHLFARALE SLQAGVLGRL NGSVGLGLPG  360
LNSSRMLQFS SLPGLGCNNS IGRAQGIAAV NNPMNAFPCL STGLELDQLQ QKQQIARLGD  420
IGAPVDDPTG FRMMQRQSGA SDINMVMSSQ LPNTNGNSGN WGNGAAVSVL PTNARSVGGP  480
LSSTGSGVHN VREILLSASN VDCMSMDIFV PPVNSLVGPS YHNLIPRNDL SLSSISAMNN  540
STGNISEVVP SDNRIPNLPI LGNMNTGLRQ GMNKIIKKDS QNHNQDFGII SNPLLNTKLS  600
RASLLNQKMV GTYTAQSQWQ NTGFCDQKMN LDFKPPVNSV VAGFGGRCES EKSTAESQMK  660
LREDYPIDHV KMENVFLSEN CNSGDELMNI IFRQVKDEAV TSPATSKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-21233289157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1031220.0BT103122.1 Picea glauca clone GQ0206_O13 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotA2X1N21e-101ORR24_ORYSI; Two-component response regulator ORR24
SwissprotQ6H8051e-101ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLA0A0C9RI590.0A0A0C9RI59_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_18815_3529 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.18e-84response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]