PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00029399-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 373aa MW: 42148.4 Da PI: 7.8395 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.4 | 1.7e-50 | 12 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrF Pt+eelvv+yL+kk+++++l++ +i++vd+yk++Pw+Lp+k+ +e+ewyfF++r++ky++g+r+nra+ sgyWkatg dk+++ PSME_00029399-RA 12 LPPGFRFFPTEEELVVHYLCKKAASQSLPV-PIIADVDLYKYDPWQLPEKALFGEREWYFFTPRNRKYPNGSRPNRAAGSGYWKATGADKPIT 103 79****************************.88***************8888899************************************** PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +k +++ vg+kk Lvfy g+apkg+kt+W+m+ey l PSME_00029399-RA 104 AKgGKKRVGVKKALVFYVGKAPKGSKTNWLMQEYCL 139 *966777***************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.54E-62 | 9 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.594 | 12 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-24 | 13 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MGRRNAEAEL HLPPGFRFFP TEEELVVHYL CKKAASQSLP VPIIADVDLY KYDPWQLPEK 60 ALFGEREWYF FTPRNRKYPN GSRPNRAAGS GYWKATGADK PITAKGGKKR VGVKKALVFY 120 VGKAPKGSKT NWLMQEYCLA DLNSPARKKD SLRLDDWVLC RIYNRKLSAA KLALEQKESS 180 SDVPMETIDE KEIENKLTST SIEHSGIEES KPFSDHLSKL GPSPISYNAI SPNIASPMTS 240 NICFQNLDFF QNSTLAFRGN NTLEAPVQNT AFNPISSSIN HQWTNCNSTD LISGLHAESS 300 RSKPSSFSEP ISEKEVQSSF RLENFSQEQQ QLLFNFSLES LQNSFPCLDQ ITFPDAHRDS 360 FTNFNGSDYL LRF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-82 | 4 | 166 | 7 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008792531.1 | 4e-96 | NAC domain-containing protein 68-like isoform X2 | ||||
Refseq | XP_010922868.2 | 3e-95 | NAC domain-containing protein 68 | ||||
Refseq | XP_020254522.1 | 4e-96 | LOW QUALITY PROTEIN: NAC domain-containing protein 68-like | ||||
TrEMBL | A0A0D6R3P9 | 1e-161 | A0A0D6R3P9_ARACU; Uncharacterized protein | ||||
STRING | XP_010257746.1 | 1e-94 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-80 | NAC family protein |