PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00029356-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | HSF | ||||||||
Protein Properties | Length: 425aa MW: 46213.3 Da PI: 8.3437 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.7 | 1.2e-35 | 25 | 117 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ F+kg+k+ll PSME_00029356-RA 25 FLTKTYQLVDDPATNHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKMVPDR---------WEFANEFFRKGEKHLL 108 9****************************************************************999.........**************** PP XXXXXXXXX CS HSF_DNA-bind 95 ekikrkkse 103 ++i+r+k++ PSME_00029356-RA 109 CEIHRRKTS 117 ******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 6.1E-38 | 16 | 109 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 5.5E-60 | 21 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 5.01E-34 | 22 | 114 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.4E-31 | 25 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.5E-19 | 25 | 48 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.5E-19 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 64 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.5E-19 | 76 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MALILDSCEG MLLSVESHKS VPAPFLTKTY QLVDDPATNH IVSWGEDDTT FVVWRPPEFA 60 RDLLPNYFKH NNFSSFVRQL NTYGFRKMVP DRWEFANEFF RKGEKHLLCE IHRRKTSSQA 120 VQYSTSGHGM PMSSSNISPT TSDDQDWSPL SIPLSSPRGV ATAAGGGGGS LMVGCSRGGP 180 AAVLHTSATA AAAAVSALSD DNERLRRNNS MLLSELTHMQ KIYNDIIFFV QHHVRIPPSL 240 PHQAGGASSS SAMNMNMNMN RVTYHQQYST ANPNAVPILL EAPTVVPSTP GIADAKDQRI 300 CMNPNNRKVV EISSSSAQIS QLFGLVAGTA RASFVDTKLK EMAAASSSPS TSSVTVADQV 360 EGIKSPPKLF GVPLHGRKRL HPQWPDIVEQ AEPNSLQVDQ YRNITVAPFK ALKTDLALNL 420 GPSSA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hdg_A | 1e-21 | 21 | 116 | 7 | 112 | Heat shock factor protein 1 |
5hdn_A | 1e-21 | 21 | 116 | 7 | 112 | Heat shock factor protein 1 |
5hdn_B | 1e-21 | 21 | 116 | 7 | 112 | Heat shock factor protein 1 |
5hdn_C | 1e-21 | 21 | 116 | 7 | 112 | Heat shock factor protein 1 |
5hdn_D | 1e-21 | 21 | 116 | 7 | 112 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010112180.1 | 1e-112 | heat stress transcription factor B-4 | ||||
Swissprot | Q9C635 | 2e-86 | HSFB4_ARATH; Heat stress transcription factor B-4 | ||||
TrEMBL | W9SA36 | 1e-110 | W9SA36_9ROSA; Heat stress transcription factor B-4 | ||||
STRING | XP_010112180.1 | 1e-111 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 4e-81 | heat shock transcription factor B4 |