PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00029306-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HSF
Protein Properties Length: 231aa    MW: 26367.2 Da    PI: 9.4866
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00029306-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.12.8e-33201112102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl k+y++++d+++++++sw +++n+fvv+ ++e++ +vLp+yF hsnf+SFvRQLn YgF+k+ + +          eF ++ Fkkg+k+ll
  PSME_00029306-RA  20 FLVKTYRLVDDPSTDHIVSWGKHNNTFVVWRPRELSASVLPRYFNHSNFSSFVRQLNSYGFRKIVRGR---------CEFGNELFKKGQKHLL 103
                       9***************************************************************9988.........67************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r+k 
  PSME_00029306-RA 104 SHIQRRKA 111
                       ******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.5E-5016109IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.08E-3217109IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.7E-3618109IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-182043IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.9E-2920109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-185870IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-187183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MGGATGGVVR DEGRLVPSPF LVKTYRLVDD PSTDHIVSWG KHNNTFVVWR PRELSASVLP  60
RYFNHSNFSS FVRQLNSYGF RKIVRGRCEF GNELFKKGQK HLLSHIQRRK ASISSQPQTS  120
MELAWQMEYE QSLIPNSSSA VQDSDVPEAV PCLSEEHEIL KRNNLLLLSE IDLLQNICVR  180
DFKLFIRHNT RDPPLINMDK KINKVSSNVS MTDVSEEISM SPPKLFGVPL R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-221611417125Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6QR152e-69A0A0D6QR15_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.16e-48heat shock transcription factor B4